Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapF   Type   Regulator
Locus tag   AABJ90_RS17740 Genome accession   NZ_AP028964
Coordinates   3472148..3472393 (+) Length   81 a.a.
NCBI ID   WP_242304596.1    Uniprot ID   -
Organism   Bacillus subtilis strain NA05 = NBRC 116153     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 3467148..3477393
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AABJ90_RS17720 (BsubNA05_34280) ydfN 3467323..3467943 (-) 621 WP_014478980.1 nitroreductase family protein -
  AABJ90_RS17725 (BsubNA05_34290) mneP 3468421..3469314 (+) 894 WP_029317351.1 manganese transporter MneP -
  AABJ90_RS17730 - 3469441..3470682 (+) 1242 Protein_3480 IS1182 family transposase -
  AABJ90_RS17735 (BsubNA05_34310) - 3470948..3471673 (-) 726 WP_017695978.1 hypothetical protein -
  AABJ90_RS17740 (BsubNA05_34320) rapF 3472148..3472393 (+) 246 WP_242304596.1 hypothetical protein Regulator
  AABJ90_RS17745 (BsubNA05_34330) - 3472532..3472855 (+) 324 WP_017695977.1 hypothetical protein -
  AABJ90_RS17750 (BsubNA05_34340) ydfL 3473418..3474230 (+) 813 WP_003234177.1 MerR family transcriptional regulator -
  AABJ90_RS17755 (BsubNA05_34350) ydfK 3474320..3475009 (+) 690 WP_015252719.1 DUF554 domain-containing protein -
  AABJ90_RS17760 (BsubNA05_34360) cesA 3475212..3476114 (+) 903 WP_128740058.1 carboxylesterase -

Sequence

Protein


Download         Length: 81 a.a.        Molecular weight: 9892.43 Da        Isoelectric Point: 6.4529

>NTDB_id=96689 AABJ90_RS17740 WP_242304596.1 3472148..3472393(+) (rapF) [Bacillus subtilis strain NA05 = NBRC 116153]
MKENQDAVVYYQLLKFRHELMLDYLHPDNVRDIEKQYEKLRELKNNNQNLTGMLEYYFYFFMGCTISGSMNWLLIKLLQT
S

Nucleotide


Download         Length: 246 bp        

>NTDB_id=96689 AABJ90_RS17740 WP_242304596.1 3472148..3472393(+) (rapF) [Bacillus subtilis strain NA05 = NBRC 116153]
ATGAAGGAAAACCAAGACGCCGTCGTTTACTACCAACTATTAAAATTCCGTCATGAATTAATGTTGGACTATCTCCATCC
TGACAATGTCAGAGATATAGAGAAACAGTATGAAAAGCTAAGAGAACTGAAAAATAACAATCAGAACCTCACAGGAATGT
TAGAATACTATTTTTATTTTTTTATGGGATGTACTATTTCAGGCAGCATGAACTGGCTTCTAATTAAACTGTTACAGACA
AGCTGA

Domains

Predicted by InterProScan.

response regulator aspartate phosphatase H, N terminal (RapH_N)

(1-23)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapF Bacillus subtilis subsp. subtilis str. 168

48.485

81.481

0.395