Detailed information NTG0966733

Bioinformatically predicted

Overview

• Name: rarA
• Type: Machinery gene
• Locus tag: ACKUBV_RS06120
• Genome accession: NZ_CP176357
• Coordinates: 1289370..1290659 (-)
• Length: 429 a.a.
• NCBI ID: WP_043043278.1
• Uniprot ID: -
• Organism: Vibrio parahaemolyticus strain AG1
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1284370..1295659

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACKUBV_RS06095 (ACKUBV_06095)	bioA	1284700..1285980 (+)	1281	WP_140096322.1	adenosylmethionine--8-amino-7-oxononanoate transaminase	-
ACKUBV_RS06100 (ACKUBV_06100)	-	1286050..1286316 (-)	267	WP_267390543.1	DksA/TraR family C4-type zinc finger protein	-
ACKUBV_RS06105 (ACKUBV_06105)	-	1286451..1286894 (-)	444	WP_025629114.1	hypothetical protein	-
ACKUBV_RS06110 (ACKUBV_06110)	-	1286869..1287885 (-)	1017	WP_079400603.1	N-acetylmuramidase domain-containing protein	-
ACKUBV_RS06115 (ACKUBV_06115)	serS	1287971..1289278 (-)	1308	WP_005495761.1	serine--tRNA ligase	-
ACKUBV_RS06120 (ACKUBV_06120)	rarA	1289370..1290659 (-)	1290	WP_043043278.1	replication-associated recombination protein A	Machinery gene
ACKUBV_RS06125 (ACKUBV_06125)	lolA	1290726..1291352 (-)	627	WP_005460060.1	outer membrane lipoprotein chaperone LolA	-
ACKUBV_RS06130 (ACKUBV_06130)	-	1291427..1294513 (-)	3087	WP_024699930.1	DNA translocase FtsK	-
ACKUBV_RS06135 (ACKUBV_06135)	lrp	1294666..1295160 (-)	495	WP_005378234.1	leucine-responsive transcriptional regulator Lrp	-

Sequence

Protein

• Length: 429 a.a.
• Molecular weight: 47621.81 Da
• Isoelectric Point: 5.8544

>NTDB_id=966733 ACKUBV_RS06120 WP_043043278.1 1289370..1290659(-) (rarA) [Vibrio parahaemolyticus strain AG1]
MRPQTIEQYIGQQHILGPGKPLRRALEAGHVHSMILWGPPGTGKTTLAEVAANYANAEVERVSAVTSGVKEIRAAIEKAR
ENKMAGRRTILFVDEVHRFNKSQQDAFLPHIEDGTVTFIGATTENPSFELNNALLSRARVYKLTSLDKEEISLALNQAIN
DKERGLGNTPANFADNVLDRLAELVNGDARMSLNYLELLYDMAEENDQGEKEITLKLLAEVAGEKVSRFDNKGDIWYDLI
SAVHKSIRGSNPDAALYWAARMIAAGCDPLYIARRLLAIASEDVGNADPRAMQVALSAWDCFTRVGPAEGERAIAQAIVY
LACAPKSNAVYVAWKQALTDAHNLPEYEVPHHLRNAPTSLMKDMGYGAEYRYAHDEPGAYAAGEQYLPPEMADRKYYQPT
NRGLETKIGEKLDYLAKLDANSQQKRYEK

Nucleotide

• Length: 1290 bp

>NTDB_id=966733 ACKUBV_RS06120 WP_043043278.1 1289370..1290659(-) (rarA) [Vibrio parahaemolyticus strain AG1]
ATGAGACCGCAAACTATTGAGCAGTACATCGGTCAGCAACACATTCTTGGCCCGGGTAAACCCCTGCGTCGCGCGTTAGA
GGCTGGCCATGTCCACTCAATGATCCTTTGGGGGCCTCCTGGTACAGGTAAAACCACGTTAGCGGAAGTCGCTGCTAATT
ACGCCAATGCGGAAGTTGAACGCGTGTCTGCGGTGACGTCCGGTGTGAAAGAGATTCGTGCTGCAATCGAAAAAGCGCGC
GAGAACAAAATGGCGGGTCGCCGCACCATCTTGTTTGTGGATGAGGTTCATCGCTTCAACAAATCGCAACAAGATGCTTT
CTTACCACATATTGAAGATGGAACCGTCACGTTTATTGGCGCAACGACAGAGAACCCATCTTTCGAACTGAATAACGCAT
TGTTGTCTCGTGCTCGAGTCTACAAGCTGACTTCACTGGATAAAGAAGAGATCTCACTCGCACTAAATCAAGCGATTAAC
GACAAAGAACGAGGGCTGGGCAATACGCCAGCGAACTTTGCTGATAATGTGTTAGACCGTCTAGCCGAGTTGGTGAACGG
TGATGCTCGCATGTCTCTTAACTACCTTGAGCTTCTCTACGATATGGCAGAAGAGAATGATCAAGGTGAAAAAGAGATAA
CACTCAAACTGCTTGCTGAAGTAGCCGGGGAGAAAGTCTCTCGCTTCGATAATAAAGGCGACATTTGGTACGATTTGATC
TCCGCAGTGCACAAATCTATTCGTGGATCAAACCCAGATGCCGCTTTGTATTGGGCTGCTCGTATGATAGCTGCAGGTTG
TGATCCACTTTACATTGCCCGCCGGTTACTTGCGATAGCATCGGAAGATGTCGGCAATGCGGACCCTAGAGCGATGCAAG
TTGCTCTTTCCGCGTGGGACTGCTTTACACGCGTTGGTCCAGCTGAAGGTGAGCGTGCGATTGCTCAAGCAATTGTTTAT
CTCGCGTGCGCTCCAAAGAGTAATGCCGTTTATGTTGCTTGGAAACAAGCGCTCACTGACGCACATAACTTGCCTGAATA
TGAAGTGCCGCATCACTTGCGTAATGCACCCACCAGTCTGATGAAAGACATGGGCTATGGCGCAGAATATCGATATGCTC
ACGACGAGCCGGGTGCTTATGCTGCGGGTGAGCAATATTTGCCACCAGAAATGGCAGATCGTAAGTACTATCAGCCGACA
AATCGCGGCCTAGAAACCAAAATCGGCGAAAAGTTAGATTACTTGGCTAAATTAGACGCAAATAGCCAACAAAAGCGCTA
TGAAAAGTAG

Domains

Predicted by InterProScan.

• AAA C-terminal domain (AAA_assoc_2) (169-248)

• MgsA AAA+ ATPase C terminal (MgsA_C) (249-415)

• ATPase family associated with various cellular activities (AAA) (AAA) (34-139)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rarA	Bacillus subtilis subsp. subtilis str. 168	39.474	97.436	0.385