Detailed information NTG0096671

Bioinformatically predicted

Overview

• Name: comB8
• Type: Machinery gene
• Locus tag: NHP_RS06300
• Genome accession: NZ_AP026684
• Coordinates: 1203510..1204235 (+)
• Length: 241 a.a.
• NCBI ID: WP_265341525.1
• Uniprot ID: -
• Organism: Helicobacter heilmannii strain
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1198510..1209235

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
NHP_RS06280 (ASB1_13240)	-	1198623..1200442 (+)	1820	Protein_1238	menaquinone biosynthesis decarboxylase	-
NHP_RS06285 (ASB1_13260)	-	1200444..1201091 (+)	648	WP_015107660.1	YggS family pyridoxal phosphate-dependent enzyme	-
NHP_RS06290 (ASB1_13270)	-	1201122..1202546 (+)	1425	WP_015107659.1	bifunctional 2-methylcitrate dehydratase/aconitate hydratase	-
NHP_RS06295 (ASB1_13280)	-	1202610..1203476 (+)	867	WP_231850663.1	pirin family protein	-
NHP_RS06300 (ASB1_13290)	comB8	1203510..1204235 (+)	726	WP_265341525.1	VirB8/TrbF family protein	Machinery gene
NHP_RS06305 (ASB1_13300)	gatB	1204786..1206225 (-)	1440	WP_053825525.1	Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB	-
NHP_RS06310 (ASB1_13310)	hemH	1206293..1207258 (+)	966	WP_015107653.1	ferrochelatase	-
NHP_RS06315 (ASB1_13320)	-	1207392..1207943 (+)	552	WP_265341526.1	thioredoxin fold domain-containing protein	-

Sequence

Protein

• Length: 241 a.a.
• Molecular weight: 27508.82 Da
• Isoelectric Point: 9.6568

>NTDB_id=96671 NHP_RS06300 WP_265341525.1 1203510..1204235(+) (comB8) [Helicobacter heilmannii strain]
MWAKLQAEQAKFEKDIASKIESLAVQNLDLNSVFQVQRRNATIAYRLVVLLSFISLALVVALIILLPLKQTEHHFIDFAN
QDKHYAIIQKADGNLSSNEALVRSLVGQYVLDRESINHIDDKERYEVVRLQSEAQVWQVFENLVASKNSIYTAQQLTRDI
HIINISLLKQSKEHNIAQVQIVAKLFRAGSPLSEKRYNIVLSFTFKPLPAFDTAMMPKNPTGFEVTRYSVTEMQNLKALK
P

Nucleotide

• Length: 726 bp

>NTDB_id=96671 NHP_RS06300 WP_265341525.1 1203510..1204235(+) (comB8) [Helicobacter heilmannii strain]
TTGTGGGCGAAACTCCAGGCCGAGCAGGCTAAGTTTGAAAAGGACATCGCAAGCAAAATCGAGAGCTTGGCGGTGCAGAA
CTTGGACTTAAACAGCGTCTTTCAGGTGCAAAGGCGCAACGCCACCATCGCCTACCGCTTGGTGGTTTTGCTTAGTTTCA
TCAGCTTGGCATTGGTGGTGGCGTTGATTATCTTGCTGCCCCTAAAGCAAACCGAACACCACTTCATAGATTTTGCCAAC
CAAGACAAGCATTACGCTATTATCCAAAAGGCAGATGGCAATTTATCCAGCAACGAGGCTTTGGTGCGCTCCTTGGTGGG
GCAGTATGTGCTCGATAGAGAGTCGATCAACCACATCGACGACAAGGAGCGCTATGAAGTGGTGCGCCTGCAAAGCGAGG
CACAGGTTTGGCAGGTTTTTGAAAACTTGGTGGCCTCTAAAAACAGCATCTACACCGCCCAGCAGCTTACAAGGGACATC
CACATCATCAACATCTCCTTGCTCAAGCAAAGCAAGGAGCACAACATCGCCCAAGTGCAGATCGTGGCAAAGCTCTTTAG
GGCGGGTAGCCCCCTAAGCGAGAAACGCTACAACATTGTGCTGAGCTTTACTTTTAAGCCCCTGCCTGCCTTTGACACCG
CCATGATGCCTAAAAACCCTACGGGCTTTGAAGTTACCCGCTACAGCGTTACCGAAATGCAAAACCTCAAAGCTTTAAAG
CCCTAG

Domains

Predicted by InterproScan.

• VirB8 protein (VirB8) (36-232)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB8	Helicobacter pylori P1	57.014	91.701	0.523