Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   ACJ229_RS02875 Genome accession   NZ_CP175656
Coordinates   474572..475837 (-) Length   421 a.a.
NCBI ID   WP_001285409.1    Uniprot ID   A0ABX6CPG9
Organism   Acinetobacter baumannii strain UMB001     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 469572..480837
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACJ229_RS02845 (ACJ229_02850) pncA 469794..470438 (-) 645 WP_002019453.1 bifunctional nicotinamidase/pyrazinamidase -
  ACJ229_RS02850 (ACJ229_02855) dapA 470768..471661 (+) 894 WP_000193601.1 4-hydroxy-tetrahydrodipicolinate synthase -
  ACJ229_RS02855 (ACJ229_02860) - 471677..472279 (+) 603 WP_001177091.1 hypothetical protein -
  ACJ229_RS02860 (ACJ229_02865) purC 472316..473035 (+) 720 WP_000917863.1 phosphoribosylaminoimidazolesuccinocarboxamide synthase -
  ACJ229_RS02865 (ACJ229_02870) - 473228..473431 (+) 204 WP_000418560.1 hypothetical protein -
  ACJ229_RS02870 (ACJ229_02875) - 473717..474556 (+) 840 WP_000349492.1 formate/nitrite transporter family protein -
  ACJ229_RS02875 (ACJ229_02880) rarA 474572..475837 (-) 1266 WP_001285409.1 replication-associated recombination protein A Machinery gene
  ACJ229_RS02880 (ACJ229_02885) - 475943..477115 (-) 1173 WP_000986280.1 PQQ-dependent sugar dehydrogenase -
  ACJ229_RS02885 (ACJ229_02890) - 477225..477683 (-) 459 WP_000102817.1 YcgN family cysteine cluster protein -
  ACJ229_RS02890 (ACJ229_02895) - 477878..478036 (+) 159 WP_000490267.1 DUF1328 domain-containing protein -
  ACJ229_RS02895 (ACJ229_02900) - 478208..478945 (+) 738 WP_000100772.1 dienelactone hydrolase family protein -
  ACJ229_RS02900 (ACJ229_02905) - 479131..479493 (+) 363 WP_000130110.1 HIT family protein -
  ACJ229_RS02905 (ACJ229_02910) mutY 479634..480668 (+) 1035 WP_001113863.1 A/G-specific adenine glycosylase -

Sequence

Protein


Download         Length: 421 a.a.        Molecular weight: 46932.60 Da        Isoelectric Point: 5.8354

>NTDB_id=965972 ACJ229_RS02875 WP_001285409.1 474572..475837(-) (rarA) [Acinetobacter baumannii strain UMB001]
MSDTHIPLPERLRPRDLSEIIGQDHLLGEHAPLRQMIDQGHLPSIIFWGPPGVGKTTIALLLAQAIDRPFVSLSALNTGV
KELREVIAESGDLLTPVVFIDEIHRFNKSQQDALLGAVEKGKITLIGATTENPSFEVNSALLSRCQVYTLNSLDSEAIQT
LLNNALQNDKFLKERYIHIEEYDALLQFAAGDARKALNLLDLIASTFEPEVENTITNAVVVKVAQQNIARYDKSGEQHYD
LVSAFIKSIRGSDPDAALYWMARMLKGGEDPVFIARRMLIAASEDIGNSNPNALLLAGECFRSVQAVGMPEARIILGQTA
VYLATSAKSNSTYLAINKALELAEKTANLPVPLHLRNAPTKLMKQQGYGINYLYPHDYPEHFVLQDYLPPELKGTKLYES
ARNKREVEGERLQQRRWQQEQ

Nucleotide


Download         Length: 1266 bp        

>NTDB_id=965972 ACJ229_RS02875 WP_001285409.1 474572..475837(-) (rarA) [Acinetobacter baumannii strain UMB001]
ATGTCAGACACCCATATTCCACTTCCTGAACGCCTGCGCCCGAGAGACTTGTCTGAAATTATTGGGCAAGATCATTTGTT
AGGTGAACATGCACCCTTACGTCAAATGATTGATCAGGGGCATTTGCCTTCTATTATTTTTTGGGGGCCGCCAGGCGTCG
GTAAAACGACAATTGCTTTGCTTTTAGCTCAGGCAATAGATCGTCCATTTGTGAGCTTATCTGCGCTGAATACGGGCGTA
AAAGAATTACGTGAAGTGATTGCAGAAAGTGGTGACTTACTGACCCCTGTAGTTTTTATTGACGAAATCCATCGCTTTAA
TAAATCACAGCAAGATGCATTATTAGGTGCCGTAGAAAAAGGTAAAATTACCTTAATTGGCGCCACCACTGAAAACCCGT
CTTTTGAAGTCAATAGTGCACTTTTATCACGCTGTCAGGTCTATACCTTAAACAGTTTAGACAGTGAGGCAATTCAGACG
CTACTTAACAATGCACTCCAAAACGATAAATTTTTAAAAGAACGCTATATTCATATTGAAGAGTATGATGCTCTTTTACA
GTTTGCAGCAGGTGATGCCCGTAAAGCACTAAATTTACTAGACTTAATTGCAAGTACTTTTGAGCCCGAAGTTGAAAATA
CCATTACCAATGCAGTTGTAGTAAAAGTCGCTCAGCAAAATATTGCGCGTTATGACAAATCGGGTGAACAGCATTACGAT
CTCGTTTCTGCCTTTATCAAATCGATTCGTGGTAGTGATCCAGATGCGGCTTTGTACTGGATGGCGCGGATGCTTAAAGG
CGGGGAAGATCCGGTTTTTATTGCAAGACGTATGTTGATTGCCGCTTCAGAAGATATTGGAAACTCGAATCCAAATGCAC
TATTGCTTGCAGGTGAATGTTTCCGTTCTGTACAGGCGGTGGGAATGCCTGAGGCTCGAATTATTTTGGGTCAAACAGCA
GTTTATTTAGCGACCAGTGCAAAAAGTAATAGTACTTACCTCGCGATTAATAAGGCGCTAGAACTTGCTGAGAAAACGGC
AAATTTACCAGTACCTTTACACTTGAGAAATGCGCCAACCAAGCTGATGAAACAGCAAGGTTATGGGATTAATTATCTCT
ATCCTCATGACTACCCTGAGCACTTTGTACTGCAAGACTACTTGCCACCTGAGTTAAAGGGAACCAAACTCTATGAGTCG
GCAAGAAACAAGCGTGAAGTTGAAGGTGAACGCCTACAACAACGCAGATGGCAGCAGGAACAATAG

Domains

Predicted by InterProScan.

ATPase family associated with various cellular activities (AAA) (AAA)

(45-147)

AAA C-terminal domain (AAA_assoc_2)

(181-250)

MgsA AAA+ ATPase C terminal (MgsA_C)

(251-410)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

40.75

95.012

0.387

Multiple sequence alignment