Detailed information    

insolico Bioinformatically predicted

Overview

Name   recJ   Type   Machinery gene
Locus tag   NSQ10_RS12670 Genome accession   NZ_CP150196
Coordinates   2452221..2454545 (-) Length   774 a.a.
NCBI ID   WP_339207989.1    Uniprot ID   -
Organism   Bacillus sp. FSL R5-0432     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2447221..2459545
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NSQ10_RS12655 (NSQ10_12655) dtd 2448870..2449313 (-) 444 WP_039180301.1 D-aminoacyl-tRNA deacylase -
  NSQ10_RS12660 (NSQ10_12660) - 2449332..2451542 (-) 2211 WP_024427858.1 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase -
  NSQ10_RS12665 (NSQ10_12665) - 2451685..2452197 (-) 513 WP_024423133.1 adenine phosphoribosyltransferase -
  NSQ10_RS12670 (NSQ10_12670) recJ 2452221..2454545 (-) 2325 WP_339207989.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  NSQ10_RS12675 (NSQ10_12675) - 2454627..2454977 (-) 351 WP_039180309.1 lipopolysaccharide assembly protein LapA domain-containing protein -
  NSQ10_RS12680 (NSQ10_12680) - 2455079..2455567 (-) 489 WP_039180311.1 cation:proton antiporter regulatory subunit -
  NSQ10_RS12685 (NSQ10_12685) secDF 2455925..2458153 (-) 2229 WP_039180313.1 protein translocase subunit SecDF -
  NSQ10_RS12690 (NSQ10_12690) - 2458195..2458491 (-) 297 WP_003216788.1 post-transcriptional regulator -

Sequence

Protein


Download         Length: 774 a.a.        Molecular weight: 87085.63 Da        Isoelectric Point: 4.8892

>NTDB_id=965926 NSQ10_RS12670 WP_339207989.1 2452221..2454545(-) (recJ) [Bacillus sp. FSL R5-0432]
MLLSKMRWEYEHPSEEKVKSLSENLNISALTASLLVKRGLEEVEEARSFLFDQKAEFHDPFLLKGMKEAVERINKAIEEQ
ESIVIFGDYDADGVTSTSVLLHTLKERSAIVDFYIPDRFKEGYGPNEQAFRYIKEQGASLVITVDTGIAAVNEARIAKEI
GLDLIITDHHEPSEELPEALAIVHPKQPGCEYPFKELAGVGVAFKVAHALLGELPVQLLDLAAIGTIADLVPLHDENRWL
AKKGLMQLRQSNRPGLKALLKEAGATLEEANEETVGFQIAPRLNAVGRIEQADPAVHLLMTEDKDEAEELARFVQELNKE
RQKIVSTITEEAIQMVEEAGDDQSAIVVAKAGWNPGVVGIVASKLTDTFSRPAIVLGIDEETQMAKGSARSIPGFDLFFH
LSKCRDILPHFGGHPMAAGMTLRADDVDLLRERLNQYANETLTEEDFIPIQRVDAVCKVDELTVQAIEEAGMLSPFGMSN
PKPFIMIEDAKLEDIRTIGANHNHIKMSLKDEDKLLDCVGFHQGKLKEEIVPGSRISVIGEMSVNEWNNRKKPQLMLKDA
RVDEWQLFDLRGKKDWEKKVSTLDSEKSLVVCFDEATKQNVDIPIHHVHAENVSTFDVHGKYVVFADVPADEQLLKQLLE
NQKPARIYTVFQREEDHFMSSFPSRDQFKWFYGFLFKRGSFPIKEQGMELAKHRGWTKDTIIFMTKVFFELGFVKIENGV
LSIVLDAPKKDLTASASYTAKQRLMELDQTLTYSSAKELKEWLNSMMSEVSPVL

Nucleotide


Download         Length: 2325 bp        

>NTDB_id=965926 NSQ10_RS12670 WP_339207989.1 2452221..2454545(-) (recJ) [Bacillus sp. FSL R5-0432]
ATGTTATTATCCAAAATGCGCTGGGAATATGAACATCCAAGCGAAGAAAAAGTGAAATCACTCTCTGAAAATCTGAATAT
TTCAGCGCTGACTGCATCGCTTCTCGTAAAAAGAGGACTTGAAGAAGTAGAAGAGGCGAGGTCTTTTTTATTTGATCAAA
AAGCCGAATTTCATGATCCATTCCTATTAAAAGGAATGAAAGAAGCAGTAGAGCGCATCAACAAAGCGATCGAAGAGCAG
GAATCGATTGTGATCTTCGGAGACTATGATGCAGATGGTGTGACAAGTACGTCTGTACTTTTACATACATTAAAAGAGCG
GTCTGCGATAGTAGACTTTTATATTCCAGATCGGTTTAAAGAAGGCTATGGGCCTAATGAACAGGCTTTTCGATATATCA
AGGAGCAAGGAGCATCGCTTGTCATCACGGTTGATACAGGCATTGCTGCTGTAAATGAAGCACGTATTGCAAAAGAAATA
GGACTAGACCTGATCATTACAGATCACCATGAACCAAGTGAGGAGCTGCCTGAGGCACTTGCCATTGTCCATCCTAAGCA
GCCAGGCTGTGAGTATCCCTTTAAAGAACTTGCTGGTGTAGGTGTAGCGTTTAAAGTGGCGCATGCACTTCTTGGGGAGC
TGCCAGTTCAGCTGTTAGATCTTGCAGCAATCGGGACAATCGCGGATCTTGTACCGCTTCATGATGAGAATAGATGGCTC
GCCAAAAAAGGGCTTATGCAGCTTCGTCAGTCGAATAGACCGGGGCTGAAAGCGTTATTGAAAGAAGCGGGAGCCACTTT
AGAAGAAGCGAACGAGGAGACGGTCGGCTTTCAAATTGCGCCAAGGCTGAATGCTGTAGGACGAATTGAACAGGCAGATC
CAGCTGTTCATCTTCTTATGACTGAGGATAAGGATGAAGCAGAAGAGCTCGCTCGTTTTGTACAGGAACTGAATAAAGAA
CGACAAAAGATTGTCAGTACGATCACAGAAGAAGCCATTCAAATGGTGGAAGAGGCAGGCGATGACCAGTCTGCGATCGT
TGTAGCGAAAGCTGGCTGGAATCCGGGCGTTGTCGGAATTGTTGCCTCTAAATTGACGGATACTTTTTCTCGTCCAGCGA
TTGTGCTTGGAATAGATGAAGAAACGCAAATGGCAAAAGGATCAGCCCGAAGCATTCCTGGCTTCGATCTATTCTTCCAT
CTAAGCAAATGCCGCGACATCCTGCCGCATTTCGGCGGGCATCCGATGGCAGCAGGGATGACACTTCGAGCGGATGATGT
CGATTTACTAAGGGAAAGATTAAATCAATATGCCAATGAAACATTGACGGAAGAAGATTTTATTCCCATTCAGCGGGTCG
ATGCTGTGTGTAAGGTAGACGAATTGACGGTTCAAGCGATTGAAGAAGCAGGGATGCTGTCACCATTTGGTATGTCAAAC
CCAAAACCGTTCATTATGATTGAAGATGCGAAGCTTGAAGATATCCGAACAATTGGGGCAAATCACAACCATATTAAAAT
GTCTCTGAAAGACGAAGACAAGCTGCTTGACTGTGTCGGCTTTCACCAAGGGAAATTAAAAGAAGAAATTGTTCCAGGAA
GCCGCATTTCCGTGATTGGAGAAATGTCCGTCAATGAATGGAATAACCGGAAAAAGCCCCAGCTGATGCTAAAAGATGCA
CGAGTTGATGAATGGCAGCTGTTTGATCTGCGCGGGAAAAAGGATTGGGAGAAGAAAGTTTCGACGCTTGATTCAGAAAA
ATCTTTGGTTGTCTGTTTTGATGAAGCAACGAAACAAAACGTCGATATCCCCATTCATCATGTTCATGCAGAAAATGTAT
CAACATTTGATGTACACGGAAAGTATGTGGTCTTTGCAGATGTTCCGGCAGATGAGCAATTGCTGAAGCAGCTTTTAGAA
AATCAAAAGCCTGCCAGAATTTATACGGTTTTTCAAAGAGAAGAAGATCATTTTATGTCCTCTTTCCCAAGCCGTGATCA
ATTCAAATGGTTTTATGGGTTCTTGTTTAAACGGGGAAGTTTTCCTATCAAAGAACAAGGAATGGAGCTTGCCAAACATA
GAGGCTGGACAAAAGATACAATCATTTTTATGACAAAGGTGTTTTTTGAACTCGGTTTTGTTAAAATAGAGAATGGTGTG
CTGTCAATAGTACTTGATGCCCCTAAAAAAGATTTAACGGCATCAGCGTCCTATACAGCAAAACAACGATTGATGGAACT
CGATCAAACACTAACATATTCCTCAGCTAAAGAGCTGAAGGAATGGCTGAATAGCATGATGAGCGAAGTCTCACCTGTGC
TTTGA

Domains

Predicted by InterproScan.

RecJ OB domain (RecJ_OB)

(453-559)

Single-strand DNA-specific exonuclease, C terminal domain (ssDNA-exonuc_C)

(566-763)

DHHA1 domain (DHHA1)

(311-437)

DHH family (DHH)

(83-226)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recJ Bacillus subtilis subsp. subtilis str. 168

67.696

100

0.68

Multiple sequence alignment