Detailed information    

insolico Bioinformatically predicted

Overview

Name   recJ   Type   Machinery gene
Locus tag   NST56_RS14830 Genome accession   NZ_CP150195
Coordinates   2791718..2794078 (-) Length   786 a.a.
NCBI ID   WP_339177444.1    Uniprot ID   -
Organism   Bacillus sp. FSL R5-0560     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2786718..2799078
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NST56_RS14810 (NST56_14810) - 2786794..2788347 (+) 1554 WP_339177438.1 SH3 domain-containing protein -
  NST56_RS14815 (NST56_14815) dtd 2788375..2788815 (-) 441 WP_229146639.1 D-aminoacyl-tRNA deacylase -
  NST56_RS14820 (NST56_14820) relA 2788828..2791032 (-) 2205 WP_010335122.1 GTP diphosphokinase -
  NST56_RS14825 (NST56_14825) - 2791200..2791712 (-) 513 WP_010335123.1 adenine phosphoribosyltransferase -
  NST56_RS14830 (NST56_14830) recJ 2791718..2794078 (-) 2361 WP_339177444.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  NST56_RS14835 (NST56_14835) - 2794145..2794480 (-) 336 WP_010335125.1 lipopolysaccharide assembly LapA domain-containing protein -
  NST56_RS14840 (NST56_14840) - 2794557..2795054 (-) 498 WP_010335126.1 cation:proton antiporter regulatory subunit -
  NST56_RS14845 (NST56_14845) secDF 2795215..2797428 (-) 2214 WP_339177449.1 protein translocase subunit SecDF -
  NST56_RS14850 (NST56_14850) - 2797466..2797762 (-) 297 WP_010335127.1 post-transcriptional regulator -

Sequence

Protein


Download         Length: 786 a.a.        Molecular weight: 88420.97 Da        Isoelectric Point: 4.9815

>NTDB_id=965863 NST56_RS14830 WP_339177444.1 2791718..2794078(-) (recJ) [Bacillus sp. FSL R5-0560]
MLASKMRWEIQRPDQEKVKSLTEQLDITPLVASLLVKRGFDTAESARLFLHTKDAEFYDPYEMKGMKEAVERIKQAISQQ
EQIMIYGDYDADGVTSTSVMLHTLQKLSAQVDFYIPDRFKEGYGPNEQAFRSIKERGFSLIITVDTGIAAVHEARVAKEL
GLDVIITDHHEPGPELPDVHAIVHPKQPGCTYPFKELAGVGVAFKLAHALLGEWPDELLDLAAIGTIADLVPLHDENRLI
ATLGLEKLRRTNRLGLKELIKLSGGDIGEANEETVGFQLAPRLNAVGRIEQADPAVHLLMSEDLFEAEELAAEIDQLNKE
RQKMVSKMTDEAIEMVEQEGLNQTAIVVAKAGWNPGVVGIVASKLVDRFYRPAIVLGIDEEKGIAKGSARSIRGFNLFES
LSECRDILPHFGGHPMAAGMTLNAEDVAELRNRLNEIADHTLTEEDFIPVQEVDLVCSVEDITVESITEMNLLSPFGMLN
PKPHVMVENAVLEDVRKIGANKNHVKMTIRNDSSQLDCVGFNKGELEENIVPGSKISIVGEMSINEWNNRKKPQLMIKDA
AVAEWQLFDLRGKRTWKDTVSALPSDKRVIVSFKEETKALLQSEDFRHDVHVISSEDQAKACELDNAYIVLLDSPPSLDM
LARLLEGKAPERIYFIFLNHEEHFLSSFPARDHFKWYYAFLLKRGTFDLNKHGSELARHKGWSVETINFMTKVFFDLGFV
KIENGVLSVISGAKKRDLTDSQTYQAKQQLMELDQKLNYSAAEELKEWLNKLMKQDSEAYESTRRT

Nucleotide


Download         Length: 2361 bp        

>NTDB_id=965863 NST56_RS14830 WP_339177444.1 2791718..2794078(-) (recJ) [Bacillus sp. FSL R5-0560]
ATGTTAGCGTCAAAAATGCGATGGGAAATCCAGAGACCAGATCAGGAAAAGGTCAAATCACTCACAGAACAATTGGACAT
AACACCTCTTGTTGCGTCGCTGCTTGTAAAAAGAGGCTTTGATACGGCAGAAAGCGCGAGACTGTTTTTACATACAAAGG
ATGCCGAATTCTATGATCCCTATGAGATGAAGGGGATGAAAGAAGCGGTTGAACGAATAAAACAGGCGATTTCACAACAA
GAACAGATTATGATATATGGCGATTATGATGCCGATGGAGTTACCAGTACGTCAGTGATGCTGCACACTTTGCAAAAGCT
GTCAGCGCAAGTTGATTTTTATATACCTGACCGGTTTAAAGAAGGCTACGGCCCCAATGAACAGGCGTTTCGTTCGATTA
AAGAACGAGGCTTCTCACTCATTATTACGGTTGATACGGGGATTGCCGCTGTCCATGAAGCGAGGGTAGCAAAGGAACTT
GGCTTAGATGTCATCATTACCGACCACCATGAGCCTGGACCAGAGCTTCCGGATGTTCATGCGATCGTTCACCCGAAGCA
GCCTGGCTGCACCTATCCTTTTAAGGAGCTTGCAGGAGTGGGAGTAGCGTTTAAGCTTGCCCACGCATTATTGGGCGAAT
GGCCAGATGAACTTCTTGACCTGGCGGCAATTGGCACCATTGCCGATCTAGTTCCGCTGCATGATGAAAACAGATTAATT
GCAACATTAGGTCTCGAAAAGCTCCGGCGGACGAACCGGCTTGGCTTAAAAGAGCTGATTAAGCTCTCAGGCGGAGACAT
CGGAGAAGCGAACGAAGAAACCGTCGGATTTCAGCTCGCACCGCGACTGAATGCAGTCGGAAGAATTGAACAGGCCGATC
CTGCTGTTCATCTGTTGATGTCAGAGGATCTGTTTGAAGCGGAAGAGCTTGCCGCTGAAATCGATCAGCTTAATAAAGAA
CGGCAAAAGATGGTCAGTAAAATGACGGATGAAGCGATTGAAATGGTTGAACAAGAAGGGCTTAATCAAACTGCAATTGT
CGTGGCAAAAGCAGGGTGGAATCCCGGAGTCGTCGGAATTGTAGCTTCAAAGCTTGTAGACCGTTTTTACCGCCCGGCCA
TTGTCCTTGGAATTGATGAAGAAAAAGGGATCGCCAAAGGTTCGGCACGAAGCATTAGGGGATTTAATTTGTTTGAAAGC
CTTTCTGAATGCAGAGATATTCTTCCGCACTTTGGAGGCCATCCAATGGCGGCGGGCATGACGCTGAATGCCGAGGATGT
GGCGGAATTGCGGAACAGGCTGAATGAGATAGCTGACCATACGCTTACGGAAGAAGATTTTATTCCTGTACAGGAAGTAG
ACCTCGTATGCAGCGTGGAGGACATTACGGTTGAAAGCATCACAGAGATGAATCTGCTTTCTCCCTTCGGCATGCTGAAC
CCGAAACCGCATGTGATGGTAGAAAACGCAGTGCTGGAAGATGTCCGCAAAATCGGGGCGAATAAAAATCATGTCAAAAT
GACGATTAGAAACGATTCCTCCCAGCTTGACTGCGTCGGTTTCAATAAAGGCGAGCTTGAGGAAAATATTGTGCCCGGCT
CAAAAATTTCGATTGTGGGCGAAATGTCGATCAACGAATGGAATAACAGAAAAAAACCGCAGCTGATGATCAAGGATGCG
GCTGTTGCTGAATGGCAGCTGTTTGACTTAAGAGGAAAACGCACGTGGAAAGATACGGTTTCCGCCCTTCCGTCTGATAA
ACGAGTCATTGTCTCCTTCAAAGAAGAAACCAAAGCGCTTCTTCAGTCTGAAGATTTTCGCCATGACGTGCACGTTATCA
GTTCTGAAGACCAAGCGAAGGCATGTGAACTTGACAATGCATATATTGTATTACTGGATTCTCCGCCTTCGCTGGACATG
CTCGCACGTTTGCTGGAAGGCAAAGCGCCTGAGCGGATTTACTTCATCTTTCTCAATCATGAGGAACACTTTTTATCATC
TTTTCCGGCAAGAGACCACTTTAAATGGTATTATGCATTCTTGCTGAAAAGAGGTACTTTTGACTTGAATAAACACGGCT
CAGAGCTTGCGAGGCATAAAGGCTGGTCCGTTGAAACAATCAATTTCATGACAAAGGTGTTTTTTGATCTCGGTTTTGTT
AAAATAGAGAATGGTGTGCTGTCTGTAATAAGCGGAGCAAAAAAACGCGATTTAACAGACTCGCAAACATATCAAGCAAA
ACAGCAGCTGATGGAGCTGGATCAAAAGCTGAATTATTCTGCGGCTGAAGAGCTGAAGGAATGGCTGAATAAGCTGATGA
AACAAGATTCAGAGGCTTATGAAAGTACGAGGAGGACATAA

Domains

Predicted by InterproScan.

DHHA1 domain (DHHA1)

(315-437)

Single-strand DNA-specific exonuclease, C terminal domain (ssDNA-exonuc_C)

(566-769)

DHH family (DHH)

(82-226)

RecJ OB domain (RecJ_OB)

(453-559)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recJ Bacillus subtilis subsp. subtilis str. 168

93.257

100

0.933

Multiple sequence alignment