Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   NST56_RS14755 Genome accession   NZ_CP150195
Coordinates   2774590..2776986 (-) Length   798 a.a.
NCBI ID   WP_339177426.1    Uniprot ID   -
Organism   Bacillus sp. FSL R5-0560     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2769590..2781986
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NST56_RS14735 (NST56_14735) - 2772473..2773534 (-) 1062 WP_326333912.1 AI-2E family transporter -
  NST56_RS14740 (NST56_14740) - 2773649..2773783 (-) 135 WP_010335109.1 YrzQ family protein -
  NST56_RS14745 (NST56_14745) - 2773805..2773996 (-) 192 WP_010335110.1 hypothetical protein -
  NST56_RS14750 (NST56_14750) - 2774007..2774486 (-) 480 WP_229146667.1 PRC-barrel domain-containing protein -
  NST56_RS14755 (NST56_14755) recD2 2774590..2776986 (-) 2397 WP_339177426.1 ATP-dependent RecD-like DNA helicase Machinery gene
  NST56_RS14760 (NST56_14760) - 2777011..2777667 (-) 657 WP_081720842.1 tetratricopeptide repeat protein -
  NST56_RS14765 (NST56_14765) mnmA 2777715..2778830 (-) 1116 WP_286058251.1 tRNA 2-thiouridine(34) synthase MnmA -
  NST56_RS14770 (NST56_14770) - 2778859..2780001 (-) 1143 WP_268445692.1 cysteine desulfurase family protein -
  NST56_RS14775 (NST56_14775) cymR 2780021..2780437 (-) 417 WP_003225879.1 cysteine metabolism transcriptional regulator CymR -
  NST56_RS14780 (NST56_14780) - 2780639..2781904 (+) 1266 WP_326218079.1 replication-associated recombination protein A -

Sequence

Protein


Download         Length: 798 a.a.        Molecular weight: 89014.68 Da        Isoelectric Point: 5.0274

>NTDB_id=965862 NST56_RS14755 WP_339177426.1 2774590..2776986(-) (recD2) [Bacillus sp. FSL R5-0560]
MQQHPDQLKMEEEPFLKGTVNTVIYHNDANLYTVLKVKVTETSEAIEDKVVSVTGYFPALQEEETYTFYGKTVTHPKFGL
QFQAEHFKKEIPTTKEGVIQYLSSDLFEGIGKKTAEEIVKKLGDRAINKILADSSVLYDVPRLSKKKADTLAGALQRHQG
LEQIMISLNQFGFGPQLSMKIYQAYESETLEKIQENPYQLVRDVEGIGFGKADELGGRMGLSGNHPERVKAAILYTLETT
CLSEGHTYIETKQLIIETQTLLNQSAADGQRIAEMDAANAIIALGENKDIVIEDERCYFPSLFLAEQNVAKRVKQIASQT
EYDDQFPESEFLMALGELEERMNVQYAPSQKEAIQKALSSPMLLLTGGPGTGKTTVIRGIVELYGELHGVSLDPSDYKKD
EAFPIVLAAPTGRAAKRMSESTGLPAVTIHRLLGWNGAEGFTHTEDQPIEGKLLIIDEASMLDIWLANHLFKAIPDHIQI
IIVGDEDQLPSVGPGQVLRDLLASQVIPTVRLTDIYRQAEGSSIVELAHEMKNGLLPNNLTAPTKDRSFIRCGGSQIKEV
VEKVVANALKKGYTAKDIQVLAPMYRGKAGINELNVMLQDILNPPKEKRREIKFGDVVYRTGDKILQLVNQPENNVFNGD
IGEITSIFYAKENTEKEDMAVVSFDGNEMTFTKKDFSQFTHAYCCSIHKSQGSEFPIVVLPVVKGYYRMLRRNLLYTAIT
RAKKFLILCGEEEALEWGVKNNDATVRQTSLKNRLSAQVAEMDAELAALQKELPFSVHDANIGMEGITPFDFMKEEQL

Nucleotide


Download         Length: 2397 bp        

>NTDB_id=965862 NST56_RS14755 WP_339177426.1 2774590..2776986(-) (recD2) [Bacillus sp. FSL R5-0560]
GTGCAGCAGCACCCGGATCAGCTGAAAATGGAGGAGGAGCCCTTTTTAAAAGGGACAGTAAACACCGTCATTTATCACAA
TGACGCCAATTTATATACGGTTCTGAAAGTGAAAGTCACAGAGACCTCCGAAGCTATTGAAGATAAAGTCGTATCCGTGA
CGGGCTACTTCCCTGCGCTTCAAGAAGAAGAGACCTACACGTTTTACGGAAAAACCGTTACTCACCCAAAGTTCGGACTG
CAATTTCAAGCTGAGCACTTCAAAAAGGAGATCCCGACAACAAAAGAAGGCGTCATTCAGTATTTGTCGAGCGATCTGTT
TGAAGGAATCGGTAAAAAAACCGCTGAAGAGATTGTGAAAAAACTGGGTGACAGAGCGATTAATAAAATTTTGGCTGATT
CTTCAGTCCTTTATGATGTTCCGAGACTGTCAAAAAAGAAAGCTGACACCCTTGCCGGTGCTTTGCAGCGGCATCAGGGA
CTGGAGCAAATTATGATTTCGCTGAATCAATTTGGCTTCGGCCCTCAGCTGTCTATGAAAATCTATCAGGCCTATGAATC
CGAGACGCTGGAAAAAATTCAGGAGAACCCTTATCAGCTTGTGAGAGACGTGGAAGGCATCGGGTTTGGAAAAGCAGATG
AGCTCGGCGGAAGAATGGGGCTCTCAGGGAATCATCCTGAGCGGGTAAAAGCGGCTATTTTATACACGCTAGAAACGACA
TGCCTGTCAGAAGGGCATACGTACATAGAAACGAAACAGCTGATTATCGAAACCCAAACGCTGTTAAACCAGTCAGCGGC
AGATGGGCAGCGCATTGCAGAAATGGATGCCGCTAACGCGATTATTGCGCTTGGAGAAAATAAGGATATTGTTATAGAAG
ATGAACGATGTTACTTTCCGTCGCTGTTTTTAGCTGAACAAAATGTGGCAAAGCGTGTGAAACAGATCGCAAGCCAAACT
GAATATGACGACCAGTTTCCTGAATCGGAATTTCTGATGGCTTTGGGAGAATTGGAAGAGCGTATGAATGTTCAGTACGC
GCCGAGTCAGAAGGAAGCGATACAAAAAGCGCTGTCGTCACCGATGCTTCTTTTAACGGGAGGACCGGGTACAGGAAAAA
CAACGGTAATCAGAGGCATTGTGGAATTGTATGGAGAACTTCACGGTGTTTCACTTGATCCGTCGGATTATAAAAAAGAT
GAAGCCTTTCCGATTGTGCTGGCCGCGCCTACAGGCAGAGCGGCGAAACGAATGAGTGAGTCAACTGGTCTTCCGGCTGT
TACGATACACCGGCTGCTCGGCTGGAACGGTGCGGAAGGATTTACTCATACAGAGGACCAGCCAATTGAAGGGAAGCTTT
TGATTATCGATGAAGCGAGTATGCTCGATATATGGCTTGCGAATCATTTGTTTAAAGCGATCCCTGATCATATTCAAATT
ATCATTGTCGGAGACGAAGACCAGCTGCCTTCCGTCGGACCCGGTCAAGTGCTCAGAGACCTTTTGGCATCCCAGGTGAT
TCCGACTGTAAGACTGACAGACATCTATCGACAAGCGGAAGGATCGTCCATTGTCGAGCTTGCCCACGAGATGAAAAACG
GGCTGCTTCCAAATAACCTGACTGCTCCGACAAAGGATCGCTCCTTTATTCGCTGCGGTGGTTCGCAAATTAAAGAAGTG
GTTGAGAAGGTTGTCGCGAATGCATTGAAAAAAGGATATACGGCAAAAGATATTCAGGTCCTCGCCCCGATGTATAGAGG
GAAAGCTGGAATCAATGAGCTGAATGTGATGCTGCAGGATATTTTAAACCCTCCAAAAGAAAAGCGGAGGGAAATTAAGT
TCGGCGACGTTGTCTATAGAACCGGGGATAAAATTTTGCAACTTGTCAATCAGCCGGAAAACAATGTGTTTAACGGCGAC
ATTGGAGAAATCACTTCCATTTTCTATGCGAAGGAAAACACAGAAAAAGAAGACATGGCTGTTGTCTCTTTTGACGGCAA
TGAAATGACGTTTACGAAAAAAGACTTCAGTCAGTTTACTCATGCGTATTGCTGCTCTATTCATAAATCGCAGGGCAGTG
AATTTCCGATCGTGGTTCTTCCTGTAGTGAAGGGCTACTATAGAATGCTCAGAAGAAACCTTCTATATACCGCTATCACG
AGGGCGAAGAAATTTCTCATTTTATGCGGGGAAGAGGAAGCGCTGGAGTGGGGCGTGAAAAATAATGACGCGACTGTCAG
ACAGACCTCACTAAAAAACAGGCTGTCAGCGCAGGTGGCTGAAATGGATGCTGAGCTTGCAGCTTTGCAAAAAGAGCTCC
CGTTCAGCGTGCACGACGCAAATATCGGAATGGAAGGCATTACGCCATTCGATTTTATGAAAGAAGAACAGCTGTAA

Domains

Predicted by InterproScan.

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(594-662)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(681-729)

AAA domain (AAA_30)

(346-553)

Helix-hairpin-helix containing domain (HHH_RecD2)

(158-248)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

96.236

99.875

0.961

Multiple sequence alignment