Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   NST56_RS09190 Genome accession   NZ_CP150195
Coordinates   1776350..1777129 (+) Length   259 a.a.
NCBI ID   WP_003220850.1    Uniprot ID   G4NSM6
Organism   Bacillus sp. FSL R5-0560     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1771350..1782129
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NST56_RS09170 (NST56_09170) trmFO 1772044..1773351 (+) 1308 WP_010334239.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  NST56_RS09175 (NST56_09175) xerC 1773419..1774333 (+) 915 WP_229150057.1 tyrosine recombinase XerC -
  NST56_RS09180 (NST56_09180) clpQ 1774346..1774891 (+) 546 WP_010334241.1 ATP-dependent protease subunit ClpQ -
  NST56_RS09185 (NST56_09185) hslU 1774899..1776311 (+) 1413 WP_339182134.1 HslU--HslV peptidase ATPase subunit -
  NST56_RS09190 (NST56_09190) codY 1776350..1777129 (+) 780 WP_003220850.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  NST56_RS09195 (NST56_09195) flgB 1777512..1777901 (+) 390 WP_229150052.1 flagellar basal body rod protein FlgB -
  NST56_RS09200 (NST56_09200) flgC 1777901..1778353 (+) 453 WP_010334245.1 flagellar basal body rod protein FlgC -
  NST56_RS09205 (NST56_09205) fliE 1778364..1778684 (+) 321 WP_029441259.1 flagellar hook-basal body complex protein FliE -
  NST56_RS09210 (NST56_09210) fliF 1778730..1780340 (+) 1611 WP_010334246.1 flagellar basal-body MS-ring/collar protein FliF -
  NST56_RS09215 (NST56_09215) fliG 1780353..1781369 (+) 1017 WP_003231981.1 flagellar motor switch protein FliG -
  NST56_RS09220 (NST56_09220) fliH 1781362..1782114 (+) 753 WP_168747821.1 flagellar assembly protein FliH -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29013.22 Da        Isoelectric Point: 4.6514

>NTDB_id=965841 NST56_RS09190 WP_003220850.1 1776350..1777129(+) (codY) [Bacillus sp. FSL R5-0560]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTKNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFNDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=965841 NST56_RS09190 WP_003220850.1 1776350..1777129(+) (codY) [Bacillus sp. FSL R5-0560]
ATGGCTTTATTACAAAAAACAAGAATTATTAACTCCATGCTGCAAGCTGCGGCAGGGAAACCGGTTAACTTTAAAGAAAT
GGCGGAAACGCTTCGGGATGTAATTGATTCCAATATTTTCGTTGTGAGCCGCAGAGGAAAACTTCTCGGGTACTCTATCA
ACCAGCAAATTGAAAATGACCGCATGAAAAAAATGCTTGAGGATCGCCAATTCCCAGAGGAATATACGAAGAATCTGTTC
AACGTCCCTGAAACATCTTCTAACCTGGATATCAATAGTGAGTATACTGCTTTTCCTGTTGAAAACAGAGACTTGTTCCA
AGCTGGTTTAACAACAATTGTGCCGATCATCGGAGGCGGAGAAAGATTAGGTACACTCATTCTTTCACGTTTACAGGATC
AGTTTAATGATGATGATTTAATTCTTGCTGAATACGGCGCTACAGTTGTCGGAATGGAAATTCTGAGAGAAAAAGCAGAA
GAAATTGAAGAAGAAGCAAGAAGCAAAGCAGTCGTACAAATGGCAATCAGCTCTCTTTCTTATAGTGAGCTTGAAGCAAT
TGAACACATCTTTGAAGAGCTTGACGGAAACGAGGGCCTTCTTGTTGCAAGTAAGATTGCAGACCGTGTCGGCATTACTC
GCTCAGTTATTGTTAACGCACTCAGAAAGCTTGAAAGTGCTGGGGTAATTGAGTCAAGATCATTAGGCATGAAGGGTACT
TATATCAAAGTGCTGAACAACAAATTCCTGATTGAATTAGAAAATCTGAAATCGCATTAA

Domains

Predicted by InterproScan.

CodY helix-turn-helix domain (HTH_CodY)

(198-255)

CodY GAF-like domain (CodY)

(3-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NSM6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

100

100

1
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.451

98.456

0.467

Multiple sequence alignment