Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   NST56_RS09160 Genome accession   NZ_CP150195
Coordinates   1768803..1769702 (+) Length   299 a.a.
NCBI ID   WP_268471242.1    Uniprot ID   -
Organism   Bacillus sp. FSL R5-0560     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1763803..1774702
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NST56_RS09140 (NST56_09140) - 1764472..1766202 (+) 1731 WP_339181444.1 hypothetical protein -
  NST56_RS09145 (NST56_09145) - 1766199..1766480 (+) 282 WP_010334234.1 FlhB-like flagellar biosynthesis protein -
  NST56_RS09150 (NST56_09150) sucC 1766654..1767811 (+) 1158 WP_010334235.1 ADP-forming succinate--CoA ligase subunit beta -
  NST56_RS09155 (NST56_09155) sucD 1767840..1768742 (+) 903 WP_010334236.1 succinate--CoA ligase subunit alpha -
  NST56_RS09160 (NST56_09160) dprA 1768803..1769702 (+) 900 WP_268471242.1 DNA-processing protein DprA Machinery gene
  NST56_RS09165 (NST56_09165) topA 1769893..1771968 (+) 2076 WP_029441257.1 type I DNA topoisomerase -
  NST56_RS09170 (NST56_09170) trmFO 1772044..1773351 (+) 1308 WP_010334239.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  NST56_RS09175 (NST56_09175) xerC 1773419..1774333 (+) 915 WP_229150057.1 tyrosine recombinase XerC -

Sequence

Protein


Download         Length: 299 a.a.        Molecular weight: 32981.22 Da        Isoelectric Point: 8.9727

>NTDB_id=965840 NST56_RS09160 WP_268471242.1 1768803..1769702(+) (dprA) [Bacillus sp. FSL R5-0560]
MDQAAACLITCRINQLLSPSLLLKWWKADPLMSLSNPSCALETASQGKVKTAALKNKIEEQYPKLQHLLSVYHQQGIEVI
PISSGQYPFWLKTIYDPPPVLFAKGDISLLSQGRKIGIVGTRHPTAYGIQVVNHLTIELCHKKWVIVSGLASGIDGLSHA
ASIKAKGRTIGVIAGGFQNIYPRENLQLAEYMAKHHLLLSEHPPETKPQKWHFPMRNRIISGLSEGIIVVQGKEKSGSLI
TAYQALEQGREVFAVPGSVFDPYAGGPIKLIQEGAKAIWSAEDIYAELPERNVQYTEPF

Nucleotide


Download         Length: 900 bp        

>NTDB_id=965840 NST56_RS09160 WP_268471242.1 1768803..1769702(+) (dprA) [Bacillus sp. FSL R5-0560]
TTGGATCAGGCCGCTGCCTGTTTAATCACTTGCAGAATCAATCAATTATTATCCCCTTCTCTTCTATTAAAATGGTGGAA
AGCTGATCCATTAATGTCACTGTCAAACCCTTCATGCGCATTAGAAACCGCTTCACAAGGCAAAGTAAAGACTGCGGCAT
TAAAAAATAAAATAGAAGAACAATATCCCAAACTTCAGCATTTACTCTCTGTATACCATCAGCAAGGCATTGAAGTCATC
CCAATATCCTCAGGTCAATATCCATTCTGGCTGAAAACCATTTATGATCCGCCTCCCGTGCTGTTTGCAAAAGGTGATAT
ATCCCTTCTTTCTCAAGGGCGTAAAATAGGAATTGTAGGTACGCGGCATCCGACAGCCTATGGAATCCAGGTTGTCAATC
ATCTTACAATAGAGCTTTGCCATAAAAAGTGGGTGATTGTCAGCGGGCTGGCGTCTGGGATTGACGGATTGTCCCATGCG
GCAAGTATTAAGGCGAAGGGGCGGACAATCGGAGTCATCGCAGGCGGATTTCAGAACATTTATCCTCGAGAAAATCTTCA
ATTAGCAGAATACATGGCTAAACACCATCTTCTTCTGTCAGAGCATCCACCTGAAACCAAACCCCAAAAATGGCATTTCC
CTATGAGAAACCGTATCATCAGCGGGTTAAGTGAGGGCATTATTGTTGTGCAGGGCAAAGAGAAAAGCGGTTCTTTGATT
ACCGCATACCAAGCGCTGGAACAAGGGAGAGAAGTATTTGCCGTACCCGGTTCTGTATTTGATCCTTACGCCGGAGGTCC
TATAAAATTGATCCAAGAGGGGGCTAAAGCCATATGGTCAGCAGAGGATATTTATGCAGAGCTTCCTGAGAGAAACGTTC
AATATACGGAACCCTTTTGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(73-278)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Bacillus subtilis subsp. subtilis str. 168

82.943

100

0.829

Multiple sequence alignment