Detailed information    

insolico Bioinformatically predicted

Overview

Name   recJ   Type   Machinery gene
Locus tag   NST29_RS05390 Genome accession   NZ_CP150194
Coordinates   1069977..1072343 (+) Length   788 a.a.
NCBI ID   WP_339232980.1    Uniprot ID   -
Organism   Geobacillus sp. FSL W8-0026     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1064977..1077343
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NST29_RS05375 (NST29_05375) - 1066033..1066317 (+) 285 WP_033018077.1 post-transcriptional regulator -
  NST29_RS05380 (NST29_05380) secDF 1066484..1068736 (+) 2253 WP_061912342.1 protein translocase subunit SecDF -
  NST29_RS05385 (NST29_05385) - 1069017..1069919 (+) 903 WP_061912341.1 cation diffusion facilitator family transporter -
  NST29_RS05390 (NST29_05390) recJ 1069977..1072343 (+) 2367 WP_339232980.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  NST29_RS05395 (NST29_05395) - 1072334..1072846 (+) 513 WP_033018074.1 adenine phosphoribosyltransferase -
  NST29_RS05400 (NST29_05400) - 1073118..1075316 (+) 2199 WP_033018073.1 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase -
  NST29_RS05405 (NST29_05405) dtd 1075341..1075799 (+) 459 WP_061912338.1 D-aminoacyl-tRNA deacylase -
  NST29_RS05410 (NST29_05410) - 1075882..1076055 (+) 174 WP_172418467.1 hypothetical protein -
  NST29_RS05415 (NST29_05415) ahpC 1076223..1076786 (+) 564 WP_033018069.1 alkyl hydroperoxide reductase subunit C -

Sequence

Protein


Download         Length: 788 a.a.        Molecular weight: 87461.22 Da        Isoelectric Point: 6.1957

>NTDB_id=965774 NST29_RS05390 WP_339232980.1 1069977..1072343(+) (recJ) [Geobacillus sp. FSL W8-0026]
MLQAKTRWEVERPDEQAVRRLAEEAGIEPLLARLLVRRGVRTAAEAEAFLRPVGQPFHDPFLLHGMERAVRRLERAIHHG
ERVLVYGDYDADGVCSTSVMVSALQEAGAAVEFYIPNRFTEGYGPNLAAFRAAKERGVSVIVTVDNGIAALKEVAAAREW
GLDVIVTDHHEPGPSLPEAYAIIHPKHPGSTYPFHSLAGVGVAFKVAHALLGRVPRHLLDLVAIGTIADLVPLVGENRLL
AAQGLAVLRETTRIGLRALFQQCRIQPSQIDEQTVGFAIAPRLNAVGRLGGADPAVALLMTDDEDEAMQLAAEMDERNRE
RQQLVAQIADEAADIVRRQYPPEQHRVLVVAGEGWNPGVVGIVASKLVEQFYRPAVVLSIDRNKGIAKGSARSIHGFDLF
ASLSKCRDMLPHFGGHPMAAGMTLALDDVERLRQRLNAIAAETLVEDDFIPPTFIDAVCSVEELTLSAARSFERLAPFGV
GNPRPLLLIEEAAVETMRRVGANGAHMKAVFSQQQAAIDVIGFGLGPLCEEIAPGTCVSAVGELLVNEWNGMAKPQLSLC
DVSVNRWQLFDARGCRDVHSLLERLPEEKRLLVAFRRQTETRPDLAPFCRELHFVMTEKEAEALPIDGRYVVLLDLPPRL
DLLGALLGDGQPARIYAVFAQPEGQFFRTFPTRDHFKWFYAFLHKHRSFPLAERGGELARARGWTTETVHFMAEVFLELG
FVREQNGVITLVRQPVKRDLTESSAYRRRRDELEAEHQLLYSTYEQLKRCLTEMIRSQTNEEASASWI

Nucleotide


Download         Length: 2367 bp        

>NTDB_id=965774 NST29_RS05390 WP_339232980.1 1069977..1072343(+) (recJ) [Geobacillus sp. FSL W8-0026]
ATGTTACAAGCGAAAACGCGTTGGGAGGTGGAGCGTCCCGACGAGCAGGCGGTGAGGCGCTTGGCGGAGGAAGCCGGCAT
CGAACCGCTGCTGGCGCGGCTTCTCGTTCGTCGCGGCGTGCGGACAGCAGCGGAAGCGGAGGCGTTTCTCCGTCCCGTTG
GGCAGCCGTTTCACGATCCGTTCTTGCTCCATGGGATGGAGCGTGCCGTTCGCCGCCTAGAAAGAGCAATTCACCATGGT
GAACGCGTGCTCGTCTATGGCGACTATGATGCGGACGGTGTTTGCAGCACATCGGTGATGGTGAGCGCTCTTCAAGAGGC
AGGAGCAGCGGTGGAATTTTACATTCCCAACCGCTTTACCGAAGGATACGGCCCGAACTTGGCGGCGTTTCGCGCGGCAA
AGGAGCGCGGCGTGTCCGTCATTGTGACAGTTGACAACGGAATTGCGGCGCTGAAGGAAGTGGCCGCCGCCCGCGAGTGG
GGGCTTGATGTGATCGTGACCGATCACCACGAGCCAGGGCCCTCGCTCCCGGAAGCGTATGCGATCATTCACCCGAAGCA
TCCCGGAAGTACATATCCGTTCCATAGTTTGGCCGGCGTCGGCGTCGCGTTCAAGGTAGCCCATGCGCTGCTCGGACGGG
TGCCGCGCCATTTGCTTGATTTGGTGGCCATCGGCACGATTGCTGATTTAGTGCCGCTTGTCGGGGAGAACCGGCTCTTG
GCTGCGCAAGGACTGGCGGTATTGCGCGAGACAACCCGCATCGGTTTGCGCGCGCTGTTTCAGCAATGCCGCATCCAACC
ATCCCAGATCGATGAACAGACGGTCGGCTTCGCCATCGCGCCGCGTTTGAACGCGGTCGGGCGTCTGGGCGGCGCCGATC
CGGCGGTGGCGCTGTTAATGACCGATGATGAAGACGAGGCCATGCAGCTGGCGGCGGAAATGGACGAGCGGAATCGCGAG
CGCCAGCAGCTCGTCGCGCAAATCGCCGATGAGGCGGCAGACATCGTGCGCCGCCAATATCCGCCGGAGCAGCATCGCGT
TTTGGTCGTGGCTGGCGAAGGCTGGAATCCCGGAGTGGTCGGCATCGTCGCTTCCAAGCTCGTCGAACAGTTTTACCGGC
CGGCGGTGGTGCTCTCCATTGACCGCAACAAAGGCATCGCCAAAGGTTCGGCGCGCAGCATCCACGGATTTGACTTGTTT
GCCAGTCTCTCCAAATGCCGCGATATGTTGCCGCATTTTGGCGGCCACCCGATGGCGGCGGGGATGACCTTGGCGTTGGA
CGACGTCGAGCGGTTGCGGCAGCGGCTGAACGCGATCGCGGCGGAGACGTTGGTCGAGGACGATTTTATCCCGCCGACGT
TCATCGATGCGGTTTGCTCGGTCGAAGAGCTGACGCTGTCGGCCGCCCGCAGTTTCGAGCGGCTCGCCCCATTCGGTGTC
GGCAATCCGCGACCGCTTTTGCTCATTGAAGAAGCCGCGGTGGAAACGATGCGGCGCGTCGGGGCGAACGGCGCCCATAT
GAAGGCGGTCTTTTCGCAACAGCAGGCGGCGATTGATGTCATCGGTTTCGGCCTCGGTCCCTTGTGCGAGGAGATCGCTC
CGGGGACGTGCGTCTCGGCCGTGGGAGAGCTGTTGGTGAACGAGTGGAACGGGATGGCGAAGCCGCAGTTGTCGCTATGC
GACGTGTCGGTCAACCGCTGGCAGCTGTTTGATGCCCGCGGCTGCCGGGACGTTCATTCGCTTCTTGAGCGGCTGCCAGA
GGAGAAGCGGCTGCTGGTGGCCTTTCGGCGCCAGACGGAAACCCGCCCTGACTTGGCGCCGTTTTGCCGGGAGCTTCATT
TCGTCATGACAGAGAAAGAGGCGGAGGCTTTGCCGATTGACGGCCGCTATGTCGTGCTGCTTGATTTGCCGCCGCGGCTT
GATTTGTTGGGGGCGCTTTTAGGCGACGGGCAGCCGGCGCGCATTTATGCCGTGTTCGCGCAGCCGGAAGGGCAATTTTT
CCGCACGTTTCCGACGCGCGACCATTTCAAGTGGTTTTATGCCTTTTTGCATAAGCATCGTTCGTTCCCGCTCGCCGAAC
GCGGCGGCGAATTGGCGCGCGCCCGCGGCTGGACGACAGAAACGGTCCATTTTATGGCCGAAGTCTTTTTGGAGCTGGGG
TTTGTGCGCGAGCAAAACGGCGTTATCACGCTCGTTCGCCAGCCTGTAAAGCGCGATCTCACCGAATCCTCGGCGTACCG
TCGGCGCCGGGACGAGCTGGAGGCGGAACATCAGTTATTATACTCCACTTACGAGCAGCTGAAACGCTGTTTGACGGAAA
TGATTCGTTCGCAAACGAATGAGGAGGCAAGCGCATCATGGATTTAA

Domains

Predicted by InterproScan.

RecJ OB domain (RecJ_OB)

(455-560)

DHH family (DHH)

(82-226)

Single-strand DNA-specific exonuclease, C terminal domain (ssDNA-exonuc_C)

(568-771)

DHHA1 domain (DHHA1)

(316-439)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recJ Bacillus subtilis subsp. subtilis str. 168

53.017

98.858

0.524

Multiple sequence alignment