Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   NST90_RS17945 Genome accession   NZ_CP150193
Coordinates   3536297..3537076 (-) Length   259 a.a.
NCBI ID   WP_000421290.1    Uniprot ID   A0A9W5VKA1
Organism   Bacillus sp. FSL E2-8900     
Function   repression of comK (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
ICE 3511001..3572763 3536297..3537076 within 0


Gene organization within MGE regions


Location: 3511001..3572763
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NST90_RS17835 (NST90_17835) - 3511572..3512471 (-) 900 WP_000868224.1 polysaccharide deacetylase family protein -
  NST90_RS17840 (NST90_17840) pnp 3512625..3514763 (-) 2139 WP_000076737.1 polyribonucleotide nucleotidyltransferase -
  NST90_RS17845 (NST90_17845) rpsO 3514924..3515193 (-) 270 WP_001229392.1 30S ribosomal protein S15 -
  NST90_RS17850 (NST90_17850) ribF 3515294..3516265 (-) 972 WP_000766706.1 bifunctional riboflavin kinase/FAD synthetase -
  NST90_RS17855 (NST90_17855) truB 3516309..3517232 (-) 924 WP_000399350.1 tRNA pseudouridine(55) synthase TruB -
  NST90_RS17860 (NST90_17860) rbfA 3517319..3517675 (-) 357 WP_000776437.1 30S ribosome-binding factor RbfA -
  NST90_RS17865 (NST90_17865) - 3517691..3517972 (-) 282 WP_000582363.1 DUF503 family protein -
  NST90_RS17870 (NST90_17870) infB 3517969..3520029 (-) 2061 WP_283748071.1 translation initiation factor IF-2 -
  NST90_RS17875 (NST90_17875) - 3520034..3520345 (-) 312 WP_001286523.1 YlxQ family RNA-binding protein -
  NST90_RS17880 (NST90_17880) - 3520346..3520618 (-) 273 WP_000071127.1 YlxR family protein -
  NST90_RS17885 (NST90_17885) nusA 3520630..3521736 (-) 1107 WP_000102604.1 transcription termination factor NusA -
  NST90_RS17890 (NST90_17890) rimP 3521754..3522224 (-) 471 WP_000359096.1 ribosome maturation factor RimP -
  NST90_RS17895 (NST90_17895) - 3522561..3526862 (-) 4302 WP_000060005.1 PolC-type DNA polymerase III -
  NST90_RS17900 (NST90_17900) - 3526987..3528687 (-) 1701 WP_000814300.1 proline--tRNA ligase -
  NST90_RS17905 (NST90_17905) rseP 3528797..3530053 (-) 1257 WP_283748072.1 RIP metalloprotease RseP -
  NST90_RS17910 (NST90_17910) dxr 3530071..3531213 (-) 1143 WP_000790373.1 1-deoxy-D-xylulose-5-phosphate reductoisomerase -
  NST90_RS17915 (NST90_17915) cdsA 3531237..3532028 (-) 792 WP_000813594.1 phosphatidate cytidylyltransferase -
  NST90_RS17920 (NST90_17920) uppS 3532046..3532822 (-) 777 WP_000971296.1 isoprenyl transferase -
  NST90_RS17925 (NST90_17925) frr 3532908..3533465 (-) 558 WP_000531501.1 ribosome recycling factor -
  NST90_RS17930 (NST90_17930) pyrH 3533468..3534190 (-) 723 WP_000042668.1 UMP kinase -
  NST90_RS17935 (NST90_17935) tsf 3534257..3535144 (-) 888 WP_001018578.1 translation elongation factor Ts -
  NST90_RS17940 (NST90_17940) rpsB 3535248..3535949 (-) 702 WP_000111485.1 30S ribosomal protein S2 -
  NST90_RS17945 (NST90_17945) codY 3536297..3537076 (-) 780 WP_000421290.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  NST90_RS17950 (NST90_17950) hslU 3537154..3538545 (-) 1392 WP_000550078.1 ATP-dependent protease ATPase subunit HslU -
  NST90_RS17955 (NST90_17955) hslV 3538568..3539110 (-) 543 WP_000526272.1 ATP-dependent protease proteolytic subunit HslV -
  NST90_RS17960 (NST90_17960) xerC 3539153..3540052 (-) 900 WP_001101243.1 tyrosine recombinase XerC -
  NST90_RS17965 (NST90_17965) trmFO 3540118..3541422 (-) 1305 WP_000213002.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  NST90_RS17970 (NST90_17970) topA 3541471..3543549 (-) 2079 WP_283748073.1 type I DNA topoisomerase -
  NST90_RS17975 (NST90_17975) dprA 3543694..3544563 (-) 870 WP_000818043.1 DNA-processing protein DprA -
  NST90_RS17980 (NST90_17980) sucD 3544652..3545554 (-) 903 WP_000115178.1 succinate--CoA ligase subunit alpha -
  NST90_RS17985 (NST90_17985) sucC 3545574..3546734 (-) 1161 WP_001020791.1 ADP-forming succinate--CoA ligase subunit beta -
  NST90_RS17990 (NST90_17990) - 3546929..3547702 (-) 774 WP_001194265.1 ribonuclease HII -
  NST90_RS17995 (NST90_17995) ylqF 3547759..3548649 (-) 891 WP_000236704.1 ribosome biogenesis GTPase YlqF -
  NST90_RS18000 (NST90_18000) lepB 3548670..3549221 (-) 552 WP_000711853.1 signal peptidase I -
  NST90_RS18005 (NST90_18005) rplS 3549323..3549667 (-) 345 WP_001186516.1 50S ribosomal protein L19 -
  NST90_RS18010 (NST90_18010) trmD 3549814..3550548 (-) 735 WP_000686903.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  NST90_RS18015 (NST90_18015) rimM 3550548..3551063 (-) 516 WP_000170278.1 ribosome maturation factor RimM -
  NST90_RS18020 (NST90_18020) - 3551185..3551412 (-) 228 WP_000737401.1 KH domain-containing protein -
  NST90_RS18025 (NST90_18025) rpsP 3551427..3551699 (-) 273 WP_000268750.1 30S ribosomal protein S16 -
  NST90_RS18030 (NST90_18030) ffh 3551801..3553150 (-) 1350 WP_000863460.1 signal recognition particle protein -
  NST90_RS18035 (NST90_18035) - 3553163..3553495 (-) 333 WP_000891062.1 putative DNA-binding protein -
  NST90_RS18040 (NST90_18040) ftsY 3553629..3554618 (-) 990 WP_000007655.1 signal recognition particle-docking protein FtsY -
  NST90_RS18045 (NST90_18045) smc 3554634..3558203 (-) 3570 WP_000478974.1 chromosome segregation protein SMC -
  NST90_RS18050 (NST90_18050) rncS 3558350..3559087 (-) 738 WP_001146875.1 ribonuclease III -
  NST90_RS18055 (NST90_18055) acpP 3559146..3559379 (-) 234 WP_000786062.1 acyl carrier protein -
  NST90_RS18060 (NST90_18060) fabG 3559449..3560189 (-) 741 WP_000911773.1 3-oxoacyl-[acyl-carrier-protein] reductase -
  NST90_RS18065 (NST90_18065) fabD 3560189..3561133 (-) 945 WP_000515900.1 ACP S-malonyltransferase -
  NST90_RS18070 (NST90_18070) plsX 3561148..3562140 (-) 993 WP_063548487.1 phosphate acyltransferase PlsX -
  NST90_RS18075 (NST90_18075) fapR 3562137..3562730 (-) 594 WP_000747348.1 transcription factor FapR -
  NST90_RS18080 (NST90_18080) recG 3562819..3564867 (-) 2049 WP_001000813.1 ATP-dependent DNA helicase RecG -
  NST90_RS18085 (NST90_18085) - 3565158..3566834 (-) 1677 WP_000027129.1 DAK2 domain-containing protein -
  NST90_RS18090 (NST90_18090) - 3566857..3567219 (-) 363 WP_000021109.1 Asp23/Gls24 family envelope stress response protein -
  NST90_RS18095 (NST90_18095) rpmB 3567596..3567784 (+) 189 WP_000124776.1 50S ribosomal protein L28 -
  NST90_RS18100 (NST90_18100) spoVM 3567858..3567938 (-) 81 WP_001213599.1 stage V sporulation protein SpoVM -
  NST90_RS18105 (NST90_18105) - 3568005..3568685 (-) 681 WP_000752663.1 thiamine diphosphokinase -
  NST90_RS18110 (NST90_18110) rpe 3568755..3569399 (-) 645 WP_000589974.1 ribulose-phosphate 3-epimerase -
  NST90_RS18115 (NST90_18115) rsgA 3569402..3570283 (-) 882 WP_001113932.1 ribosome small subunit-dependent GTPase A -
  NST90_RS18120 (NST90_18120) pknB 3570530..3572503 (-) 1974 WP_000904748.1 Stk1 family PASTA domain-containing Ser/Thr kinase -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 28793.05 Da        Isoelectric Point: 4.7165

>NTDB_id=965741 NST90_RS17945 WP_000421290.1 3536297..3537076(-) (codY) [Bacillus sp. FSL E2-8900]
MELLAKTRKLNALLQSAAGKPVNFREMSDTMCEVIEANVFVVSRRGKLLGYAIHQQIENERMKQMLAERQFPEEYTQSLF
NITETSSNLDVNSAYTAFPVENRELFGQGLTTIVPIVGGGERLGTLVLARLGQEFLDDDLILAEYSSTVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELNGTEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNDKFLQELAKLKTN

Nucleotide


Download         Length: 780 bp        

>NTDB_id=965741 NST90_RS17945 WP_000421290.1 3536297..3537076(-) (codY) [Bacillus sp. FSL E2-8900]
ATGGAATTATTAGCAAAAACGAGAAAATTAAATGCGTTATTACAGAGCGCAGCAGGGAAGCCTGTAAACTTTAGAGAAAT
GTCTGACACAATGTGTGAAGTAATCGAAGCAAACGTATTCGTAGTTAGCCGTCGTGGTAAATTACTAGGTTATGCAATTC
ACCAACAAATCGAAAACGAACGCATGAAGCAAATGCTTGCAGAACGTCAATTCCCAGAAGAATATACACAAAGCTTATTC
AACATTACAGAAACATCTTCAAACTTAGATGTGAACAGTGCTTACACAGCATTCCCAGTAGAAAACAGAGAATTATTCGG
TCAAGGTTTAACTACAATCGTACCAATCGTTGGTGGCGGTGAGCGTCTAGGTACATTAGTATTAGCTCGTCTTGGTCAAG
AGTTCTTAGATGATGATTTAATCCTTGCTGAGTACAGCTCAACTGTTGTAGGTATGGAAATCTTACGTGAAAAAGCAGAA
GAAATCGAAGAGGAAGCGCGTAGTAAAGCTGTTGTTCAAATGGCAATCAGCTCATTATCTTACAGTGAGTTAGAAGCAAT
TGAGCATATCTTCGAAGAATTAAATGGAACAGAAGGTTTACTTGTTGCAAGTAAAATTGCTGATCGCGTAGGAATTACTC
GCTCTGTAATCGTAAATGCACTACGTAAATTAGAAAGTGCTGGTGTTATTGAGTCTCGCTCTTTAGGTATGAAAGGAACA
TACATTAAAGTGCTAAACGACAAGTTTCTACAAGAACTTGCTAAATTAAAAACAAACTAA

Domains

Predicted by InterproScan.

CodY GAF-like domain (CodY)

(2-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

81.467

100

0.815
  codY Lactococcus lactis subsp. lactis strain DGCC12653

46.667

98.456

0.459

Multiple sequence alignment