Detailed information    

insolico Bioinformatically predicted

Overview


Name   recJ   Type   Machinery gene
Locus tag   NSU19_RS13775 Genome accession   NZ_CP150190
Coordinates   2847982..2850360 (-) Length   792 a.a.
NCBI ID   WP_339196921.1    Uniprot ID   -
Organism   Aeribacillus sp. FSL k6-2211     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context


Location: 2842982..2855360
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NSU19_RS13760 (NSU19_13760) dtd 2844585..2845025 (-) 441 WP_063387981.1 D-aminoacyl-tRNA deacylase -
  NSU19_RS13765 (NSU19_13765) - 2845041..2847224 (-) 2184 WP_063387980.1 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase -
  NSU19_RS13770 (NSU19_13770) - 2847449..2847961 (-) 513 WP_063387979.1 adenine phosphoribosyltransferase -
  NSU19_RS13775 (NSU19_13775) recJ 2847982..2850360 (-) 2379 WP_339196921.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  NSU19_RS13780 (NSU19_13780) secDF 2850882..2853104 (-) 2223 WP_339196923.1 protein translocase subunit SecDF -
  NSU19_RS13785 (NSU19_13785) - 2853150..2853443 (-) 294 WP_066249531.1 post-transcriptional regulator -
  NSU19_RS13790 (NSU19_13790) spoVB 2853543..2855123 (+) 1581 WP_339196925.1 stage V sporulation protein B -

Sequence


Protein


Download         Length: 792 a.a.        Molecular weight: 90002.44 Da        Isoelectric Point: 5.5925

>NTDB_id=965629 NSU19_RS13775 WP_339196921.1 2847982..2850360(-) (recJ) [Aeribacillus sp. FSL k6-2211]
MLRSKFRWNRLYRDESNEEAVRALIDSLNITYLTARLLVNRGIQNVEEAKEFLHIKEPSFHDPFLLDGMERACERIFAAI
RAGEKIVVYGDYDADGVSSTAVLLTALKELGANVDFYIPNRFSEGYGPNEHAFRMIHEKGCRLIITVDTGIAAINEADLA
KRLGIDLIITDHHEPGPVLPDAYAIIHPKLPNSTYPFKELAGVGVAFKMAHALYGKVPESLIEIAAIGTIADLVPLYGEN
RLLAKKGIEKLKTTTRPGINSLLSIAGVDKSSVNEETIGFVLGPRINAAGRLQEADPAVELLLTDDKEKADMLAKEIDQL
NKQRQKLVQEITDEAIKEIEKNFPIEDNPVLVVAKENWNSGVIGIVASRLVEKFYRPAIVLSIDRETGLAKGSARSIQGF
DLFKNLSECRELLPHFGGHTMAAGMTLKAEHIDELRQKMIDLANSQLSDEDFIPVKNIECACSLEHVTIKAVEELEKLAP
FGVDNPKPLFLLENVNAADVRKIGVNGNHLKMKIEEKEFELDVVGFGQGELAEEISPFANVSIVGELAINEWNYVKKPQL
LLQDLAVPAWQLFDWRGSRGTEALLSKLPAEKRLLIAFHEESIKLYKDQPYIHEIHIISEIKDYKNIDVSNKYVVFLDMP
QAIEFLVSAFEQGIPERIYAIFYQHADHFFQTMPTREHFKWYYAFLTKKSSFDYKKYGEDLAKYRGWTKETIFFMTKVFF
ELEFVTINNGVITLNKKVKKRDLSESGTYQQKLDQMKLEQQLLYSSYQELKEWFEKAVLKRDADKFLQVHEW

Nucleotide


Download         Length: 2379 bp        

>NTDB_id=965629 NSU19_RS13775 WP_339196921.1 2847982..2850360(-) (recJ) [Aeribacillus sp. FSL k6-2211]
ATGCTGAGATCTAAATTTCGTTGGAATCGTTTATATAGGGATGAGTCCAACGAAGAGGCTGTTCGAGCATTAATCGACTC
TTTGAATATTACATATTTGACTGCTCGATTACTTGTGAATCGCGGCATTCAAAATGTTGAAGAAGCAAAAGAGTTTTTAC
ATATAAAGGAACCTTCATTTCATGATCCTTTTTTGTTGGATGGGATGGAGCGGGCATGTGAGCGTATTTTTGCAGCAATC
CGCGCTGGTGAAAAGATTGTCGTATACGGTGATTATGATGCGGACGGCGTTTCCAGCACTGCCGTCCTGTTGACGGCATT
AAAGGAATTGGGGGCAAACGTCGATTTTTACATACCGAATCGATTTTCAGAAGGATACGGGCCAAACGAACATGCTTTCC
GAATGATTCATGAAAAAGGATGCAGGCTGATTATAACAGTTGATACCGGCATCGCGGCAATCAATGAAGCGGATTTAGCC
AAAAGGCTTGGAATCGACCTCATTATCACAGACCATCATGAACCGGGGCCTGTTTTGCCTGATGCGTATGCGATCATTCA
TCCGAAATTGCCAAATTCAACATATCCTTTTAAGGAGCTGGCAGGTGTAGGCGTTGCTTTTAAAATGGCCCATGCCCTTT
ATGGAAAGGTTCCAGAATCTCTGATAGAGATCGCAGCCATTGGAACAATTGCTGATTTAGTACCTCTATACGGAGAAAAT
CGGCTTCTTGCGAAAAAAGGGATTGAAAAATTAAAAACGACGACAAGACCTGGCATAAATTCGCTTCTTTCCATTGCTGG
AGTGGACAAATCTTCCGTAAATGAGGAAACGATAGGATTTGTTTTAGGACCGAGAATTAATGCGGCAGGGAGGCTGCAAG
AAGCCGATCCTGCCGTTGAATTGTTGTTGACAGATGATAAAGAAAAAGCTGATATGCTTGCTAAGGAAATCGATCAATTA
AATAAGCAAAGGCAGAAGCTTGTACAAGAGATAACGGACGAAGCGATTAAGGAAATTGAGAAAAATTTTCCAATCGAAGA
CAATCCTGTTTTAGTCGTCGCAAAAGAAAACTGGAATTCTGGAGTGATCGGAATCGTTGCTTCCAGATTGGTCGAAAAAT
TTTACCGTCCTGCCATCGTGTTGAGCATTGATCGTGAGACAGGTCTTGCCAAAGGGTCTGCGCGAAGCATTCAAGGGTTT
GATCTATTTAAAAACTTATCGGAATGCAGGGAGCTTCTCCCTCATTTTGGAGGCCATACGATGGCTGCTGGCATGACGCT
GAAAGCAGAGCATATTGACGAGCTGCGCCAAAAAATGATCGATCTTGCAAATAGTCAGCTTTCAGATGAAGATTTTATTC
CCGTAAAAAACATTGAATGTGCCTGTTCATTGGAGCATGTCACAATAAAAGCAGTCGAAGAGCTGGAGAAGCTTGCCCCT
TTCGGAGTCGATAATCCGAAGCCGCTCTTTTTACTAGAGAATGTCAATGCGGCAGATGTTAGAAAAATTGGGGTAAACGG
AAATCATTTGAAAATGAAGATTGAGGAGAAGGAATTTGAATTAGATGTCGTCGGCTTTGGACAGGGAGAATTGGCAGAAG
AAATATCTCCTTTCGCAAACGTTTCTATTGTCGGTGAGCTTGCGATCAACGAATGGAATTATGTAAAAAAGCCGCAGCTA
TTGCTTCAAGACCTTGCCGTGCCAGCGTGGCAGCTTTTTGATTGGCGAGGTTCAAGAGGAACGGAGGCTTTGCTCTCTAA
ACTTCCTGCTGAAAAACGATTGCTGATCGCCTTTCATGAAGAATCTATAAAATTATATAAAGATCAACCGTACATTCATG
AAATTCATATAATATCAGAAATAAAGGATTACAAAAATATAGATGTTTCCAATAAGTATGTTGTATTTCTCGATATGCCC
CAGGCAATCGAATTTCTTGTTTCAGCATTTGAGCAAGGAATTCCTGAAAGAATTTATGCTATTTTTTATCAGCATGCAGA
CCACTTTTTTCAAACAATGCCGACAAGAGAGCATTTTAAATGGTATTACGCATTCTTAACGAAAAAAAGTTCTTTCGATT
ACAAAAAATATGGGGAAGATTTAGCCAAATACCGTGGCTGGACAAAAGAAACGATCTTTTTTATGACAAAGGTGTTTTTT
GAACTTGAATTTGTTACAATAAACAATGGTGTGATTACATTAAACAAAAAGGTGAAAAAACGGGATTTATCAGAATCCGG
AACATATCAGCAGAAGCTGGATCAAATGAAACTGGAACAGCAGCTTCTCTATTCTTCTTATCAAGAACTGAAGGAATGGT
TTGAAAAGGCAGTCTTGAAACGAGATGCCGATAAATTTTTACAAGTTCATGAATGGTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recJ Bacillus subtilis subsp. subtilis str. 168

55.471

99.242

0.551


Multiple sequence alignment