Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   NSU19_RS13700 Genome accession   NZ_CP150190
Coordinates   2830702..2833077 (-) Length   791 a.a.
NCBI ID   WP_339196909.1    Uniprot ID   -
Organism   Aeribacillus sp. FSL k6-2211     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2825702..2838077
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NSU19_RS13680 (NSU19_13680) - 2825880..2826146 (-) 267 WP_063387994.1 IreB family regulatory phosphoprotein -
  NSU19_RS13685 (NSU19_13685) alaS 2826218..2828854 (-) 2637 WP_339193149.1 alanine--tRNA ligase -
  NSU19_RS13690 (NSU19_13690) - 2829183..2830244 (-) 1062 WP_339196906.1 AI-2E family transporter -
  NSU19_RS13695 (NSU19_13695) - 2830317..2830502 (-) 186 WP_094246265.1 hypothetical protein -
  NSU19_RS13700 (NSU19_13700) recD2 2830702..2833077 (-) 2376 WP_339196909.1 ATP-dependent RecD-like DNA helicase Machinery gene
  NSU19_RS13705 (NSU19_13705) - 2833099..2833752 (-) 654 WP_339196911.1 tetratricopeptide repeat protein -
  NSU19_RS13710 (NSU19_13710) mnmA 2833834..2834949 (-) 1116 WP_063387989.1 tRNA 2-thiouridine(34) synthase MnmA -
  NSU19_RS13715 (NSU19_13715) - 2834965..2836110 (-) 1146 WP_130158149.1 cysteine desulfurase family protein -
  NSU19_RS13720 (NSU19_13720) - 2836129..2836548 (-) 420 WP_063387987.1 Rrf2 family transcriptional regulator -
  NSU19_RS13725 (NSU19_13725) - 2836684..2837961 (+) 1278 WP_339196914.1 replication-associated recombination protein A -

Sequence

Protein


Download         Length: 791 a.a.        Molecular weight: 89461.70 Da        Isoelectric Point: 5.1240

>NTDB_id=965628 NSU19_RS13700 WP_339196909.1 2830702..2833077(-) (recD2) [Aeribacillus sp. FSL k6-2211]
MGGQQESLFHEESTPFVRGVIKHIVFQNEQNFYTVIKVKIEETNEQFEQDQVTVTGFFPLLQLHDSYTFFGAKKYHPKFG
VQFQAERFQKELPTTKEGVIQYLSSGLFKGIGKKTAEAIVNELGEHAISIILEDPDSLKRVKKLSKEKAKILAETLKEHQ
GLEGVLIGLNQLGIGPALGMKIYQLYREDTLKIIQKNPYQLVEDIEGIGFIRADEIGRELGISGNHPDRLKAACLFTIEQ
DAVKEGHVYVTKVQLMEKAKKLLTQNGEDISDQDIERIILELEEDRKIIVEEDRIYLPSLYYAEVGLANNIEEILTQNQF
QDMFPESEFLLELGKLEEKMNVQYAPSQKEAIQRAIHSPILLLTGGPGTGKTTVIKGIVEIYANLHGLSLNPKEYQKKEE
PFPIVLVAPTGRAAKRMAEATGLPAVTIHRLLGWNGSEGFEHNEDHPISGKLLIVDEVSMVDIWLMHQLFKSLPSDIQIV
LVGDEHQLPSVGPGQVLRDLIQSGRIPVVTLTDIYRQAEGSTIIDLAHSIRQGTLPTNLLQTTQDRSFIPCTTSQIKEVI
TRVIENALKKGYSAKDIQVLAPMYRGIAGIDQLNEMLQEMLNPPSKEKREIKHGNVIYRIGDKVLQLVNQPDQNVFNGDI
GEIVSIFYAKENVEKEDMVVISYDGIEVTYTKQDFNQFTHAYCCSIHKAQGSEFPIVILPVVKGYFRMLRRNLIYTAVTR
SKQFLIMCGEWEALKMGVYNNQESMRQTTLKERLKTSELAELKEELPFPLEDANIGMENITPYDFMEEGEG

Nucleotide


Download         Length: 2376 bp        

>NTDB_id=965628 NSU19_RS13700 WP_339196909.1 2830702..2833077(-) (recD2) [Aeribacillus sp. FSL k6-2211]
ATGGGCGGTCAACAGGAGAGTTTGTTTCATGAGGAAAGTACTCCTTTTGTTCGCGGAGTCATTAAACATATTGTGTTCCA
GAATGAGCAAAATTTTTATACTGTTATTAAAGTGAAAATTGAAGAGACGAATGAACAGTTTGAGCAAGATCAAGTGACCG
TGACGGGTTTTTTTCCTCTTCTCCAATTACATGACAGCTATACGTTTTTTGGCGCGAAAAAATACCATCCAAAATTCGGC
GTACAATTTCAAGCCGAGCGTTTTCAAAAGGAGCTTCCAACTACGAAAGAAGGAGTTATTCAATATTTATCAAGCGGGCT
TTTTAAAGGAATCGGCAAAAAAACAGCGGAAGCGATCGTGAATGAACTGGGCGAACATGCGATTTCGATTATTTTGGAGG
ATCCCGATTCATTAAAAAGAGTGAAGAAGCTTTCAAAGGAAAAAGCCAAAATACTGGCTGAAACACTGAAGGAACATCAA
GGTTTAGAAGGGGTTTTAATCGGATTAAATCAGCTTGGCATTGGGCCTGCACTTGGGATGAAAATTTATCAGCTGTATCG
GGAGGATACGCTTAAAATCATTCAAAAAAACCCATATCAATTGGTGGAAGATATTGAAGGGATCGGCTTTATTCGAGCGG
ATGAAATTGGGAGAGAGCTTGGGATCTCCGGCAATCATCCCGACCGGCTGAAGGCGGCTTGTTTGTTCACTATTGAACAA
GATGCTGTAAAAGAAGGACATGTATATGTTACAAAAGTTCAGCTGATGGAAAAAGCGAAAAAATTGCTCACCCAAAATGG
AGAAGACATATCTGATCAGGATATTGAAAGAATCATTCTTGAATTGGAAGAAGATCGAAAAATTATCGTCGAGGAAGATC
GAATTTATTTACCCTCTCTTTACTATGCTGAAGTGGGACTTGCCAATAACATTGAAGAAATTTTAACCCAAAACCAATTT
CAAGATATGTTTCCTGAATCAGAATTTTTGCTGGAGTTAGGAAAACTGGAAGAAAAAATGAATGTTCAGTATGCCCCCTC
TCAAAAAGAAGCCATTCAGCGGGCTATTCATTCGCCGATTCTTTTGCTGACCGGCGGGCCTGGAACGGGAAAAACAACCG
TTATCAAAGGCATCGTTGAAATTTATGCGAACCTCCATGGCCTTTCATTGAACCCAAAAGAATATCAAAAGAAGGAAGAG
CCGTTTCCCATTGTACTGGTGGCACCTACTGGACGAGCTGCAAAAAGAATGGCAGAAGCAACCGGTCTTCCTGCCGTCAC
AATCCACCGCCTTTTAGGATGGAATGGTTCAGAAGGGTTTGAACACAATGAAGATCATCCGATTTCTGGAAAGCTTCTGA
TTGTTGATGAAGTATCTATGGTTGATATTTGGCTCATGCATCAATTGTTTAAATCGCTTCCTTCGGACATACAAATTGTT
CTTGTCGGAGACGAACACCAGCTTCCGTCCGTTGGACCCGGCCAAGTGCTTCGCGATTTGATTCAATCCGGACGAATCCC
AGTTGTTACGCTGACAGATATTTATAGACAAGCAGAAGGATCTACAATTATTGATTTGGCCCATTCAATCCGCCAAGGAA
CTCTTCCAACGAACCTTTTGCAAACGACACAAGACAGATCGTTTATTCCTTGTACAACATCACAAATAAAAGAAGTTATA
ACGAGAGTAATTGAGAACGCTTTGAAAAAAGGATATTCTGCGAAGGATATACAGGTGTTGGCACCGATGTACAGAGGGAT
TGCCGGCATTGATCAGTTGAATGAAATGCTTCAGGAAATGTTAAACCCCCCTTCAAAAGAAAAAAGAGAGATCAAGCATG
GTAACGTTATTTACCGAATTGGGGACAAAGTGCTGCAGCTCGTCAATCAGCCTGATCAAAACGTGTTTAATGGCGATATT
GGGGAGATTGTTTCTATTTTTTACGCAAAAGAAAATGTCGAAAAAGAAGATATGGTGGTCATTTCTTACGACGGTATCGA
AGTAACCTATACGAAGCAAGATTTTAATCAGTTTACTCATGCTTACTGCTGCTCCATCCATAAAGCGCAGGGAAGCGAAT
TTCCGATTGTCATTTTGCCGGTAGTAAAAGGCTACTTTCGGATGTTGAGAAGAAATTTGATTTATACAGCTGTTACAAGG
AGCAAGCAATTTTTAATTATGTGCGGAGAATGGGAAGCGTTAAAAATGGGAGTATACAACAATCAGGAGTCGATGAGGCA
GACAACCTTAAAAGAGAGGCTGAAAACGTCTGAACTTGCCGAGCTGAAAGAGGAGCTTCCTTTTCCACTAGAAGATGCCA
ACATTGGGATGGAGAACATCACTCCATATGATTTTATGGAAGAGGGCGAAGGATAA

Domains

Predicted by InterproScan.

AAA domain (AAA_30)

(344-553)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(680-728)

Helix-hairpin-helix containing domain (HHH_RecD2)

(158-249)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(593-659)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

63.613

99.368

0.632

Multiple sequence alignment