Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   NSQ94_RS05890 Genome accession   NZ_CP150189
Coordinates   1192074..1194449 (+) Length   791 a.a.
NCBI ID   WP_339230368.1    Uniprot ID   -
Organism   Aeribacillus sp. FSL K6-2833     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1187074..1199449
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NSQ94_RS05865 (NSQ94_05865) - 1187189..1188466 (-) 1278 WP_063387986.1 replication-associated recombination protein A -
  NSQ94_RS05870 (NSQ94_05870) - 1188602..1189021 (+) 420 WP_063387987.1 Rrf2 family transcriptional regulator -
  NSQ94_RS05875 (NSQ94_05875) - 1189040..1190185 (+) 1146 WP_339230362.1 cysteine desulfurase family protein -
  NSQ94_RS05880 (NSQ94_05880) mnmA 1190201..1191316 (+) 1116 WP_339230364.1 tRNA 2-thiouridine(34) synthase MnmA -
  NSQ94_RS05885 (NSQ94_05885) - 1191399..1192052 (+) 654 WP_339230366.1 tetratricopeptide repeat protein -
  NSQ94_RS05890 (NSQ94_05890) recD2 1192074..1194449 (+) 2376 WP_339230368.1 ATP-dependent RecD-like DNA helicase Machinery gene
  NSQ94_RS05895 (NSQ94_05895) - 1194649..1194834 (+) 186 WP_094246265.1 hypothetical protein -
  NSQ94_RS05900 (NSQ94_05900) - 1194907..1195968 (+) 1062 WP_339230370.1 AI-2E family transporter -
  NSQ94_RS05905 (NSQ94_05905) alaS 1196297..1198933 (+) 2637 WP_339210152.1 alanine--tRNA ligase -
  NSQ94_RS05910 (NSQ94_05910) - 1199005..1199271 (+) 267 WP_063387994.1 IreB family regulatory phosphoprotein -

Sequence

Protein


Download         Length: 791 a.a.        Molecular weight: 89426.66 Da        Isoelectric Point: 5.1714

>NTDB_id=965565 NSQ94_RS05890 WP_339230368.1 1192074..1194449(+) (recD2) [Aeribacillus sp. FSL K6-2833]
MGGQQESLFHEESTPFVRGVIKHIVFQNEQNFYTVIKVKIEETNEQFEQDQVTVTGFFPLLQLHDSYTFFGAKKYHPKFG
VQFHADRFQKELPTTKEGVIQYLSSGLFKGIGKKTAEAIVNELGEHAISIILEDPDSLKRVKKLSKEKAKILAETLKEHQ
GLEGVLIGLNQLGIGPALGMKIYQLYREDTLKIIQKNPYQLVEDIEGIGFIRADEIGRELGISGNHPDRLKAACLFTIEQ
DAVKEGHVYVTKVQLMEKAKKLLTQNGEDISDQDIERIILELEEDRKIIVEEDRIYLPSLYYAEVGLANNIEEILTQNQF
QDMFPESEFLLELGKLEEKMNVQYAPSQKEAIQRAIHSPILLLTGGPGTGKTTVIKGIVEIYANLHGLSLNPKEYQKKEE
PFPIVLVAPTGRAAKRMAEATGLPAVTIHRLLGWNGSEGFEHNEDHPISGKLLIVDEVSMVDIWLMHQLFKSLPSDIQIV
LVGDEHQLPSVGPGQVLRDLIQSGRIPVVTLTDIYRQAEGSTIIDLAHSIRQGTLPANLLQTTQDRSFIPCTTSQIKEVI
TRVIENALKKGYSAKDIQVLAPMYRGIAGIDQLNEMLQEMLNPPSKEKREIKHGNVIYRIGDKVLQLVNQPDQNVFNGDI
GEIVSIFYAKENVEKEDMVVISYDGIEVTYTKQDFNQFTHAYCCSIHKAQGSEFPIVILPVVKGYFRMLRRNLIYTAVTR
SKQFLIMCGEWEALKMGVYNNQESMRQTTLKERLKTSELAELKEELPFPLEDANIGMENITPYDFMEEGEG

Nucleotide


Download         Length: 2376 bp        

>NTDB_id=965565 NSQ94_RS05890 WP_339230368.1 1192074..1194449(+) (recD2) [Aeribacillus sp. FSL K6-2833]
ATGGGCGGTCAACAGGAGAGTTTGTTTCATGAGGAAAGTACTCCTTTTGTTCGCGGAGTCATTAAACATATTGTGTTCCA
GAATGAGCAAAATTTTTATACTGTTATTAAAGTGAAAATTGAAGAGACGAATGAACAGTTTGAGCAAGATCAAGTGACCG
TGACGGGTTTTTTTCCTCTTCTCCAATTACATGACAGCTATACGTTTTTTGGCGCGAAAAAATACCATCCAAAATTCGGC
GTACAATTTCATGCTGATCGTTTTCAAAAGGAGCTTCCAACTACGAAAGAAGGAGTTATTCAATATTTATCAAGCGGGCT
TTTTAAAGGAATCGGCAAAAAAACAGCGGAAGCGATCGTGAATGAACTGGGCGAACATGCGATTTCGATTATTTTGGAGG
ATCCCGATTCATTAAAAAGAGTGAAGAAGCTTTCAAAGGAAAAAGCCAAAATACTGGCTGAAACACTGAAGGAACATCAA
GGTTTAGAAGGGGTTTTAATCGGATTAAATCAGCTTGGCATTGGGCCTGCACTTGGGATGAAAATTTATCAGCTGTATCG
GGAGGATACGCTTAAAATCATTCAAAAAAACCCATATCAATTGGTGGAAGATATTGAAGGGATCGGCTTTATTCGAGCGG
ATGAAATTGGGAGAGAGCTTGGGATCTCCGGCAATCATCCCGACCGGCTGAAGGCGGCTTGTTTGTTCACTATTGAACAA
GATGCTGTAAAAGAAGGACATGTATATGTTACAAAAGTTCAGCTGATGGAAAAAGCGAAAAAATTGCTCACCCAAAATGG
AGAAGACATATCTGATCAGGATATTGAAAGAATCATTCTTGAATTGGAAGAAGATCGAAAAATTATCGTCGAGGAAGATC
GAATTTATTTACCCTCTCTTTACTATGCTGAAGTGGGACTTGCCAATAACATTGAAGAAATTTTAACCCAAAACCAATTT
CAAGATATGTTTCCTGAATCAGAATTTTTGCTGGAGTTAGGAAAACTGGAAGAAAAAATGAATGTTCAGTATGCCCCCTC
TCAAAAAGAAGCCATTCAGCGGGCTATTCATTCGCCGATTCTTTTGCTGACCGGCGGGCCTGGAACGGGAAAAACAACCG
TTATCAAAGGCATCGTTGAAATTTATGCGAACCTCCACGGCCTTTCATTGAACCCAAAAGAATATCAAAAGAAGGAAGAG
CCGTTTCCCATTGTACTGGTGGCACCTACTGGACGAGCTGCAAAAAGAATGGCAGAAGCAACCGGTCTTCCTGCCGTCAC
AATCCACCGCCTTTTAGGATGGAATGGTTCAGAAGGATTTGAACACAATGAGGATCATCCGATTTCTGGAAAGCTTCTGA
TTGTTGATGAAGTATCAATGGTTGATATTTGGCTCATGCATCAATTGTTTAAATCGCTTCCTTCGGACATACAAATTGTT
CTTGTTGGAGACGAACACCAGCTTCCGTCCGTTGGACCCGGCCAAGTGCTTCGCGATTTGATTCAATCCGGACGAATCCC
AGTTGTTACGCTGACAGATATTTATAGACAAGCAGAAGGATCTACAATTATTGATTTGGCCCATTCAATCCGCCAAGGAA
CTCTTCCAGCGAACCTTTTGCAAACGACACAAGACAGATCGTTTATTCCTTGTACAACATCACAAATAAAAGAAGTTATA
ACGAGAGTAATTGAGAACGCTTTGAAAAAAGGATATTCTGCGAAGGATATACAGGTGTTGGCACCGATGTACAGAGGGAT
TGCCGGCATTGATCAGTTGAATGAAATGCTTCAGGAAATGTTAAACCCCCCTTCAAAAGAAAAAAGAGAGATCAAGCATG
GCAACGTTATTTACCGAATTGGGGACAAAGTGCTGCAGCTCGTCAATCAGCCTGATCAAAACGTGTTTAATGGCGATATT
GGGGAGATTGTTTCTATTTTTTACGCAAAAGAAAATGTCGAAAAAGAAGATATGGTGGTCATTTCTTACGACGGTATCGA
AGTAACCTATACGAAGCAAGATTTTAATCAGTTTACTCATGCTTACTGCTGCTCCATCCATAAAGCGCAGGGAAGCGAAT
TTCCGATTGTCATTTTGCCGGTAGTAAAAGGCTACTTTCGGATGTTGAGAAGAAATTTGATTTATACAGCGGTTACAAGG
AGCAAGCAATTTTTAATTATGTGCGGAGAATGGGAAGCGTTAAAAATGGGAGTATACAACAATCAGGAGTCGATGAGGCA
GACAACCTTAAAAGAGAGGCTGAAAACGTCTGAACTTGCCGAGCTGAAAGAGGAGCTTCCTTTTCCACTAGAAGATGCCA
ACATTGGGATGGAGAACATCACTCCATATGATTTTATGGAAGAGGGCGAAGGATAA

Domains

Predicted by InterproScan.

UvrD-like helicase C-terminal domain (UvrD_C_2)

(680-728)

AAA domain (AAA_30)

(344-553)

Helix-hairpin-helix containing domain (HHH_RecD2)

(158-249)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(593-659)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

63.359

99.368

0.63

Multiple sequence alignment