Detailed information    

insolico Bioinformatically predicted

Overview

Name   recJ   Type   Machinery gene
Locus tag   NSQ94_RS05805 Genome accession   NZ_CP150189
Coordinates   1173094..1175472 (+) Length   792 a.a.
NCBI ID   WP_339230356.1    Uniprot ID   -
Organism   Aeribacillus sp. FSL K6-2833     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1168094..1180472
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NSQ94_RS05790 (NSQ94_05790) spoVB 1168329..1169909 (-) 1581 WP_339230353.1 stage V sporulation protein B -
  NSQ94_RS05795 (NSQ94_05795) - 1170009..1170302 (+) 294 WP_066249531.1 post-transcriptional regulator -
  NSQ94_RS05800 (NSQ94_05800) secDF 1170348..1172570 (+) 2223 WP_066249528.1 protein translocase subunit SecDF -
  NSQ94_RS05805 (NSQ94_05805) recJ 1173094..1175472 (+) 2379 WP_339230356.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  NSQ94_RS05810 (NSQ94_05810) - 1175493..1176005 (+) 513 WP_063387979.1 adenine phosphoribosyltransferase -
  NSQ94_RS05815 (NSQ94_05815) - 1176130..1177134 (+) 1005 WP_152642860.1 transposase -
  NSQ94_RS05820 (NSQ94_05820) - 1177160..1177714 (+) 555 WP_339229550.1 hypothetical protein -
  NSQ94_RS05825 (NSQ94_05825) - 1177926..1180109 (+) 2184 WP_063387980.1 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase -

Sequence

Protein


Download         Length: 792 a.a.        Molecular weight: 90016.48 Da        Isoelectric Point: 5.5925

>NTDB_id=965564 NSQ94_RS05805 WP_339230356.1 1173094..1175472(+) (recJ) [Aeribacillus sp. FSL K6-2833]
MLRSKFRWNRLYRDESNEEAVRALIDSLNITYLTARLLVNRGIQNVEEAKEFLHIKEPSFHDPFLLDGMERACERIFAAI
RAGEKIVVYGDYDADGVSSTAVLLTALKELGANVDFYIPNRFSEGYGPNEHAFRMIHEKGCRLIITVDTGIAAINEADLA
KRLGIDLIITDHHEPGPVLPDAYAIIHPKLPNSTYPFKELAGVGVAFKMAHALYGKVPESLIEIAAIGTIADLVPLYGEN
RLLAKKGIEKLKTTTRPGINSLLSIAGVDKSSVNEETIGFVLGPRINAAGRLQEADPAVELLLTDDKEKADMLAKEIDQL
NKQRQKLVQEITDEAIKEIEKNFPIEDNPVLVVAKENWNSGVIGIVASRLVEKFYRPAIVLSIDRETGLAKGSARSIQGF
DLFKNLSECRELLPHFGGHTMAAGMTLKAEHIDELRQKMIDLANSQLSDEDFIPVKNIECACSLEHVTIKAVEELEKLAP
FGVDNPKPLFLLENVNAADVRKIGVNGNHLKMKIEEKEFELDVVGFGQGELAEEISPFANVSIVGELAINEWNYVKKPQL
LLQDLAVPAWQLFDWRGSRGTEALLSKLPAEKRLLIAFHEESIKLYKDQPYIHEIHIISEIKDYKNIDVSNKYVVFLDMP
PAIEFLVSAFEQGMPERIYAIFYQHADHFFQTMPTREHFKWYYAFLTKKNSFDYKKYGEDLAKYRGWTKETIFFMTKVFF
ELEFVTINNGVITLNKKVKKRDLSESGTYQQKLDQMKLEQQLLYSSYQELKEWFEKAVLKRDADKFLQVHEW

Nucleotide


Download         Length: 2379 bp        

>NTDB_id=965564 NSQ94_RS05805 WP_339230356.1 1173094..1175472(+) (recJ) [Aeribacillus sp. FSL K6-2833]
ATGCTGAGATCTAAATTTCGTTGGAATCGTTTATATAGGGATGAGTCCAACGAAGAGGCTGTTCGAGCATTAATCGACTC
TTTGAATATTACATATTTGACTGCTCGATTACTTGTGAATCGCGGCATTCAAAATGTTGAAGAAGCAAAAGAGTTTTTAC
ATATAAAGGAACCTTCATTTCATGATCCTTTTTTGTTGGATGGGATGGAGCGGGCATGTGAGCGTATTTTTGCAGCAATC
CGCGCTGGTGAAAAGATTGTCGTATACGGTGATTATGATGCGGACGGCGTTTCCAGCACTGCCGTCCTGTTGACGGCATT
AAAGGAATTGGGGGCAAACGTCGATTTTTACATACCGAATCGATTTTCAGAAGGATACGGGCCAAACGAACATGCTTTCC
GAATGATTCATGAAAAAGGATGCAGGCTGATTATAACAGTTGATACCGGCATCGCGGCAATCAATGAAGCGGATTTAGCC
AAAAGGCTTGGAATCGACCTCATTATAACAGACCATCATGAACCGGGGCCTGTTTTGCCTGATGCGTATGCGATCATTCA
TCCGAAATTGCCAAATTCAACATATCCTTTTAAGGAGCTGGCAGGTGTAGGCGTTGCTTTTAAAATGGCCCATGCCCTTT
ATGGAAAGGTTCCAGAATCTCTGATAGAGATCGCAGCCATTGGAACAATTGCTGATTTAGTACCTCTATACGGAGAAAAT
CGGCTTCTTGCGAAAAAAGGGATTGAAAAATTAAAAACGACGACAAGACCTGGCATAAATTCGCTTCTTTCCATTGCTGG
AGTGGACAAATCTTCCGTAAATGAGGAAACGATAGGATTTGTTTTAGGACCGAGAATCAATGCGGCAGGGAGGCTGCAAG
AAGCCGATCCTGCCGTTGAATTGTTGTTGACAGATGATAAAGAAAAAGCTGATATGCTTGCTAAGGAAATCGATCAATTA
AATAAGCAAAGGCAGAAGCTTGTACAAGAGATAACGGACGAAGCGATTAAGGAAATTGAGAAAAATTTTCCAATCGAAGA
CAATCCTGTTTTAGTCGTCGCAAAAGAAAACTGGAATTCTGGAGTGATCGGAATCGTTGCTTCCAGATTGGTCGAAAAAT
TTTACCGTCCTGCCATCGTGTTGAGCATTGATCGTGAGACAGGTCTTGCCAAAGGGTCTGCGCGAAGCATTCAAGGGTTT
GATCTATTTAAAAACTTATCGGAATGCAGGGAGCTTCTCCCTCATTTTGGAGGCCATACGATGGCTGCTGGCATGACGCT
GAAAGCAGAGCATATTGACGAGTTGCGCCAAAAAATGATCGATCTTGCAAATAGTCAGCTTTCAGATGAAGATTTTATTC
CTGTAAAAAACATTGAATGTGCCTGTTCATTGGAGCATGTCACAATAAAAGCAGTCGAAGAGCTGGAGAAGCTTGCCCCT
TTCGGAGTCGATAATCCGAAGCCGCTCTTTTTACTAGAGAATGTCAATGCGGCAGATGTTAGAAAAATTGGGGTAAACGG
AAATCATTTGAAAATGAAGATTGAGGAGAAGGAATTTGAATTAGATGTCGTCGGCTTTGGACAGGGAGAATTGGCAGAAG
AAATATCTCCTTTCGCAAACGTTTCTATTGTCGGTGAGCTTGCGATCAACGAATGGAATTATGTAAAAAAGCCGCAGCTA
TTGCTTCAAGACCTTGCCGTGCCAGCGTGGCAGCTTTTTGATTGGCGAGGTTCAAGAGGAACGGAGGCTTTGCTCTCTAA
ACTTCCTGCTGAAAAACGATTGCTGATCGCCTTTCATGAAGAATCTATAAAATTATATAAAGATCAACCGTACATTCATG
AAATTCATATAATATCAGAAATAAAGGATTACAAAAATATAGATGTTTCCAATAAGTATGTTGTATTTCTCGATATGCCC
CCGGCAATCGAATTTCTTGTTTCAGCATTTGAGCAAGGAATGCCTGAAAGAATTTATGCTATTTTTTATCAGCACGCAGA
CCACTTTTTTCAAACAATGCCGACAAGAGAGCATTTTAAATGGTATTACGCATTCTTAACGAAAAAAAATTCTTTCGATT
ACAAAAAATATGGGGAAGATTTAGCCAAATACCGTGGCTGGACAAAAGAAACGATCTTTTTTATGACAAAGGTGTTTTTT
GAACTTGAATTTGTTACAATAAACAATGGTGTGATTACATTAAACAAAAAGGTGAAAAAACGGGATTTATCAGAATCCGG
AACATATCAGCAGAAGCTGGATCAAATGAAACTGGAACAGCAGCTTCTCTATTCTTCTTATCAAGAACTGAAGGAATGGT
TTGAAAAGGCAGTCTTGAAACGAGATGCCGATAAATTTTTACAAGTTCATGAATGGTAA

Domains

Predicted by InterproScan.

DHHA1 domain (DHHA1)

(318-441)

RecJ OB domain (RecJ_OB)

(458-564)

Single-strand DNA-specific exonuclease, C terminal domain (ssDNA-exonuc_C)

(571-774)

DHH family (DHH)

(85-229)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recJ Bacillus subtilis subsp. subtilis str. 168

55.598

99.242

0.552

Multiple sequence alignment