Detailed information    

insolico Bioinformatically predicted

Overview

Name   recJ   Type   Machinery gene
Locus tag   NSQ84_RS12835 Genome accession   NZ_CP150188
Coordinates   2661041..2663419 (-) Length   792 a.a.
NCBI ID   WP_327873383.1    Uniprot ID   -
Organism   Aeribacillus sp. FSL K6-3256     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2656041..2668419
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NSQ84_RS12820 (NSQ84_12820) dtd 2657644..2658084 (-) 441 WP_063387981.1 D-aminoacyl-tRNA deacylase -
  NSQ84_RS12825 (NSQ84_12825) - 2658100..2660283 (-) 2184 WP_063387980.1 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase -
  NSQ84_RS12830 (NSQ84_12830) - 2660508..2661020 (-) 513 WP_063387979.1 adenine phosphoribosyltransferase -
  NSQ84_RS12835 (NSQ84_12835) recJ 2661041..2663419 (-) 2379 WP_327873383.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  NSQ84_RS12840 (NSQ84_12840) secDF 2663944..2666166 (-) 2223 WP_327863351.1 protein translocase subunit SecDF -
  NSQ84_RS12845 (NSQ84_12845) - 2666212..2666505 (-) 294 WP_066249531.1 post-transcriptional regulator -
  NSQ84_RS12850 (NSQ84_12850) spoVB 2666605..2668185 (+) 1581 WP_066249533.1 stage V sporulation protein B -

Sequence

Protein


Download         Length: 792 a.a.        Molecular weight: 89906.38 Da        Isoelectric Point: 5.5924

>NTDB_id=965538 NSQ84_RS12835 WP_327873383.1 2661041..2663419(-) (recJ) [Aeribacillus sp. FSL K6-3256]
MLRSKFRWNRLYRDESNEEAVRALIDSLNITYLTARLLVNRGIQNVEEAKEFLHIKEPSFHDPFLLDGMERACERIFAAI
RAGEKIVVYGDYDADGVSSTAVLLTALKELGANVDFYIPNRFSEGYGPNEHAFRMIHEKGCRLIITVDTGIAAINEADLA
KRLGIDLIITDHHEPGPVLPDAYAIIHPKLPNSTYPFKELAGVGVAFKMAHALYGKVPESLIEIAAIGTIADLVPLYGEN
RLLAKKGIEKLKTTTRPGINSLLSIAGVDKSSVNEETIGFVLGPRINAAGRLQEADPAVELLLTDDKEKADMLAKEIDQL
NKQRQKLVQEITDEAIKEIEKNFPIEDNPVLVVAKENWNSGVIGIVASRLVEKFYRPAIVLSIDRETGLAKGSARSIQGF
DLFKNLSECRELLPHFGGHTMAAGMTLKAEHIDELRQKMIDLANSQLSDEDFIPVKNIECACSLEHVTIKAVEELEKLAP
FGVDNPKPLFLLENVNAADVRKIGVNGNHLKMKIEEKEFELDVVGFGQGELAEEISPFANVSIVGELAINEWNYVKKPQL
LLQDLAVPACQLFDWRGSRGTEALLSKLPAEKRLLIAFHEESIKLYKDQPYIHEIHIISEIKDYKNIDVSNKYVVFLDMP
PAIEFLVSAFEQGMPERIYAIFYQHADHFFQTMPTREHFKWYYAFLTKKSSFDYKKYGEDLAKYRGWTKETIFFMTKVFF
ELEFVTINNGVITLNKKVKKRDLSESGTYQQKLDQMKLEQQLLYSSYQELKEWFEKAVLKRDADKFLQVHEW

Nucleotide


Download         Length: 2379 bp        

>NTDB_id=965538 NSQ84_RS12835 WP_327873383.1 2661041..2663419(-) (recJ) [Aeribacillus sp. FSL K6-3256]
ATGCTGAGATCTAAATTTCGTTGGAATCGTTTATATAGGGATGAGTCCAACGAAGAGGCTGTTCGAGCATTAATCGACTC
TTTGAATATTACATATTTGACTGCTCGATTACTTGTGAATCGCGGCATTCAAAATGTTGAAGAAGCAAAAGAGTTTTTAC
ATATAAAGGAACCTTCATTTCATGATCCTTTTTTGTTGGATGGGATGGAGCGGGCATGTGAGCGTATTTTTGCAGCAATC
CGCGCTGGTGAAAAGATTGTCGTATACGGTGATTATGATGCGGACGGCGTTTCCAGCACTGCCGTCCTGTTGACGGCATT
AAAGGAATTGGGGGCAAACGTCGATTTTTACATACCGAATCGATTTTCAGAAGGATACGGGCCAAACGAACATGCTTTCC
GAATGATTCATGAAAAAGGATGCAGGCTGATTATAACAGTTGATACCGGCATCGCGGCAATCAATGAAGCGGATTTAGCC
AAAAGGCTTGGAATCGACCTCATTATAACAGACCATCATGAACCGGGGCCTGTTTTGCCTGATGCGTATGCGATCATTCA
TCCGAAATTGCCAAATTCAACATATCCTTTTAAGGAGCTGGCAGGTGTAGGCGTTGCTTTTAAAATGGCCCATGCCCTTT
ATGGAAAGGTTCCAGAATCTCTGATAGAGATCGCAGCCATTGGAACAATTGCTGATTTAGTACCTCTATACGGAGAAAAT
CGGCTTCTTGCGAAAAAAGGGATTGAAAAATTAAAAACGACGACAAGACCTGGCATAAATTCGCTTCTTTCCATTGCTGG
AGTGGACAAATCTTCCGTAAATGAGGAAACGATAGGATTTGTTTTAGGACCGAGAATTAATGCGGCAGGGAGGCTGCAAG
AAGCCGATCCTGCCGTTGAATTGTTGTTGACAGATGATAAAGAAAAAGCTGATATGCTTGCTAAGGAAATCGATCAATTA
AATAAGCAAAGGCAGAAGCTTGTACAAGAGATAACGGACGAAGCGATTAAGGAAATTGAGAAAAATTTTCCAATCGAAGA
CAATCCTGTTTTAGTCGTCGCAAAAGAAAACTGGAATTCTGGAGTGATCGGAATCGTTGCTTCCAGATTGGTCGAAAAAT
TTTACCGTCCTGCCATCGTGTTGAGCATTGATCGTGAGACAGGTCTTGCCAAAGGGTCTGCGCGAAGCATTCAAGGGTTT
GATCTATTTAAAAACTTATCGGAATGCAGGGAGCTTCTCCCTCATTTTGGAGGCCATACGATGGCTGCTGGCATGACGCT
GAAAGCAGAGCATATTGACGAGCTGCGCCAAAAAATGATCGATCTTGCAAATAGTCAGCTTTCAGATGAAGATTTTATTC
CTGTAAAAAACATTGAATGTGCCTGTTCATTGGAGCATGTCACAATAAAAGCAGTCGAAGAGCTGGAGAAGCTTGCCCCT
TTCGGAGTCGATAATCCGAAGCCGCTCTTTTTACTAGAGAATGTCAATGCGGCAGATGTTAGAAAAATTGGGGTAAACGG
AAATCATTTGAAAATGAAGATTGAGGAGAAGGAATTTGAATTAGATGTCGTCGGCTTTGGACAGGGAGAATTGGCAGAAG
AAATATCTCCTTTCGCAAACGTTTCTATTGTCGGTGAGCTTGCGATCAACGAATGGAATTATGTAAAAAAGCCGCAGCTA
TTGCTTCAAGACCTTGCCGTGCCAGCGTGCCAGCTTTTTGATTGGCGAGGTTCAAGAGGAACGGAGGCTTTGCTCTCTAA
ACTTCCTGCTGAAAAACGATTGCTGATCGCCTTTCATGAAGAATCTATAAAATTATATAAAGATCAACCGTACATTCATG
AAATTCATATAATATCAGAAATAAAGGATTACAAAAATATAGATGTTTCCAATAAGTATGTTGTATTTCTCGATATGCCC
CCGGCAATCGAATTTCTTGTTTCAGCATTTGAGCAAGGAATGCCTGAAAGAATTTATGCTATTTTTTATCAGCATGCAGA
CCACTTTTTTCAAACAATGCCGACAAGAGAGCATTTTAAATGGTATTACGCATTCTTAACGAAAAAAAGTTCTTTCGATT
ACAAAAAATATGGGGAAGATTTAGCCAAATACCGTGGCTGGACAAAAGAAACGATCTTTTTTATGACAAAGGTGTTTTTT
GAACTTGAATTTGTTACAATAAACAATGGTGTGATTACATTAAACAAAAAGGTGAAAAAACGGGATTTATCAGAATCCGG
AACATATCAGCAGAAGCTGGATCAAATGAAACTGGAACAGCAGCTTCTCTATTCTTCTTATCAAGAACTGAAGGAATGGT
TTGAAAAGGCAGTCTTGAAACGAGATGCCGATAAATTTTTACAAGTTCATGAATGGTAA

Domains

Predicted by InterproScan.

DHHA1 domain (DHHA1)

(318-441)

Single-strand DNA-specific exonuclease, C terminal domain (ssDNA-exonuc_C)

(571-774)

DHH family (DHH)

(85-229)

RecJ OB domain (RecJ_OB)

(458-564)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recJ Bacillus subtilis subsp. subtilis str. 168

55.471

99.242

0.551

Multiple sequence alignment