Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL/pilP   Type   Machinery gene
Locus tag   ACJKII_RS26100 Genome accession   NZ_CP174606
Coordinates   5641437..5641961 (-) Length   174 a.a.
NCBI ID   WP_003116136.1    Uniprot ID   A0A0H2ZIN8
Organism   Pseudomonas aeruginosa strain SKYC.SG.Lo     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5636437..5646961
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACJKII_RS26085 (ACJKII_26085) aroB 5637565..5638671 (-) 1107 WP_004347587.1 3-dehydroquinate synthase -
  ACJKII_RS26090 (ACJKII_26090) aroK 5638721..5639239 (-) 519 WP_003095833.1 shikimate kinase AroK -
  ACJKII_RS26095 (ACJKII_26095) pilQ 5639251..5641383 (-) 2133 WP_003116137.1 type 4a pilus secretin PilQ Machinery gene
  ACJKII_RS26100 (ACJKII_26100) comL/pilP 5641437..5641961 (-) 525 WP_003116136.1 type 4a pilus biogenesis lipoprotein PilP Machinery gene
  ACJKII_RS26105 (ACJKII_26105) pilO 5641958..5642581 (-) 624 WP_003116135.1 type 4a pilus biogenesis protein PilO Machinery gene
  ACJKII_RS26110 (ACJKII_26110) pilN 5642578..5643174 (-) 597 WP_003116134.1 type 4a pilus biogenesis protein PilN -
  ACJKII_RS26115 (ACJKII_26115) pilM 5643174..5644238 (-) 1065 WP_003110888.1 type IV pilus assembly protein PilM Machinery gene
  ACJKII_RS26120 (ACJKII_26120) - 5644423..5646894 (+) 2472 WP_003095841.1 penicillin-binding protein 1A -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 19224.07 Da        Isoelectric Point: 9.7252

>NTDB_id=965479 ACJKII_RS26100 WP_003116136.1 5641437..5641961(-) (comL/pilP) [Pseudomonas aeruginosa strain SKYC.SG.Lo]
MRARLILSSLLLTMLAGCGANSEFGDLQAYMNEVRARPKGNIEPLPKFQPYEAFTYSASNLRSPFQPPVKIDLTVRQKGN
KVVKPDETRVKQFLEGFNIETFEMVGTLSNAQGTFALVKGAGGVHRVRVGDYLGRNDGKVVGISEGKIDVIEIVPDGEGN
WLERPRSLTLKERS

Nucleotide


Download         Length: 525 bp        

>NTDB_id=965479 ACJKII_RS26100 WP_003116136.1 5641437..5641961(-) (comL/pilP) [Pseudomonas aeruginosa strain SKYC.SG.Lo]
ATGAGAGCCCGCCTGATTCTGAGCAGCTTGCTGCTCACCATGCTTGCCGGTTGCGGCGCGAATTCCGAGTTCGGCGATCT
TCAAGCCTATATGAACGAGGTACGTGCTCGACCTAAGGGCAATATCGAGCCTCTGCCGAAGTTTCAGCCATATGAAGCTT
TTACTTATAGCGCTTCGAACCTGCGTAGTCCGTTCCAGCCGCCGGTGAAGATCGACCTGACCGTGCGGCAGAAAGGCAAT
AAGGTGGTTAAACCCGACGAGACACGGGTCAAGCAGTTCCTGGAAGGTTTCAACATCGAAACCTTCGAGATGGTCGGCAC
ACTGTCCAACGCCCAGGGTACCTTCGCCTTGGTGAAGGGCGCGGGTGGCGTGCATCGGGTGAGGGTCGGGGACTACCTGG
GGCGCAACGATGGCAAGGTCGTCGGCATCAGCGAAGGAAAAATAGACGTGATTGAAATCGTTCCTGACGGAGAGGGGAAC
TGGCTGGAGCGTCCGCGCAGCCTGACTCTCAAGGAACGCTCCTGA

Domains

Predicted by InterProScan.

Pilus assembly protein, PilP (PilP)

(26-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZIN8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL/pilP Acinetobacter baylyi ADP1

36.628

98.851

0.362