Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   NSQ23_RS04640 Genome accession   NZ_CP150179
Coordinates   884873..887227 (+) Length   784 a.a.
NCBI ID   WP_339173348.1    Uniprot ID   -
Organism   Anoxybacillus sp. FSL W8-1294     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 879873..892227
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NSQ23_RS04620 (NSQ23_04620) - 880087..881232 (+) 1146 WP_339173342.1 cysteine desulfurase family protein -
  NSQ23_RS04625 (NSQ23_04625) - 881382..882611 (-) 1230 WP_339170721.1 IS110 family transposase -
  NSQ23_RS04630 (NSQ23_04630) mnmA 883044..884141 (+) 1098 WP_339173343.1 tRNA 2-thiouridine(34) synthase MnmA -
  NSQ23_RS04635 (NSQ23_04635) - 884205..884861 (+) 657 WP_339173345.1 tetratricopeptide repeat protein -
  NSQ23_RS04640 (NSQ23_04640) recD2 884873..887227 (+) 2355 WP_339173348.1 ATP-dependent RecD-like DNA helicase Machinery gene
  NSQ23_RS04645 (NSQ23_04645) - 887328..887519 (+) 192 WP_021093919.1 hypothetical protein -
  NSQ23_RS04650 (NSQ23_04650) - 887530..887670 (+) 141 WP_006320530.1 YrzQ family protein -
  NSQ23_RS04655 (NSQ23_04655) - 887758..888816 (+) 1059 WP_006320531.1 AI-2E family transporter -
  NSQ23_RS04660 (NSQ23_04660) alaS 889126..891759 (+) 2634 WP_339173355.1 alanine--tRNA ligase -
  NSQ23_RS04665 (NSQ23_04665) - 891843..892109 (+) 267 WP_004889315.1 IreB family regulatory phosphoprotein -

Sequence

Protein


Download         Length: 784 a.a.        Molecular weight: 88294.84 Da        Isoelectric Point: 5.1420

>NTDB_id=965173 NSQ23_RS04640 WP_339173348.1 884873..887227(+) (recD2) [Anoxybacillus sp. FSL W8-1294]
MALQQQLDLDGRSFIKGVHVGTIFHNEDNLYSVIRVRVEETNEAHIEKDVVVTGYFPLLGEYDTYTFFGTFKEHPRFGKQ
YVVDHFRKEFPETKEGVIQYLSGGMFKGIGKKTAAAIVETLGERAISKILEDPDVLANVPKLTKAKAKQLYETLREHEGL
EQIMIALSQFGFGPQLSMKIYQVYKDETLQIIRTNPYQLVEDVEGIGFGRADDLGLQLGISGNHPDRIRAGCLYVIEQHC
MQEGHVYMTYEQLLTEVKQLLEAKRQEVVEVACISREMIHLSEEGKLIVEEDRFYIPSLYFAEKGIVSNVKRLLEQKGMT
TFSEAEFLLALGEWEEEANIQYSQKQKEAIQQALCSPLFILTGGPGTGKTTVINGIVHLFAKLHGLSLDPTSYDTDESFP
ILLAAPTGRAAKRMTESTGLPAMTIHRLLGWSGDGFQRGEDEPINGKLLIVDEMSMVDTWLANQLLKSVPSSMQVIFVGD
EDQLPSVGPGQVLKDLLRANVIPTVRLTDIYRQAEGSSIISLAHAIKDGNIPHDLTFPQKDRSFIRCTGGQVVDVVKKVA
ENAKQKGYRAKDVQVLAPMYRGHAGIDRLNETLQQLFNPKHDHKRELTFGDVVYRVGDKVLQLVNQPDENVFNGDIGEIV
AIFYANENVEKQDLVVVSFDGNEVTYPKQELNQITHAYCCSIHKSQGSEFPIVILPVVKSYYRMLRRNLLYTAITRSKRY
LILCGEEEAFQLGVMRTDDGTRQTTLYEKLTNTISPEQQLLPMEDANIGMEGVTPYDFMENDVT

Nucleotide


Download         Length: 2355 bp        

>NTDB_id=965173 NSQ23_RS04640 WP_339173348.1 884873..887227(+) (recD2) [Anoxybacillus sp. FSL W8-1294]
ATGGCGTTGCAACAACAGTTAGATTTAGACGGACGATCGTTTATTAAAGGCGTCCATGTCGGTACCATTTTTCATAACGA
AGACAATTTATATTCAGTTATTCGTGTACGCGTAGAAGAAACAAATGAAGCGCATATAGAAAAAGACGTTGTTGTGACAG
GCTATTTCCCTTTGCTCGGTGAGTATGATACATATACGTTTTTCGGCACATTTAAAGAACATCCGCGCTTTGGAAAACAA
TATGTTGTTGATCATTTTCGAAAAGAGTTTCCTGAAACGAAAGAAGGAGTGATTCAATATTTATCGGGCGGCATGTTTAA
AGGAATCGGAAAAAAAACAGCAGCCGCGATCGTAGAAACGTTAGGTGAGCGAGCGATTTCAAAAATATTAGAAGATCCCG
ATGTGCTTGCGAACGTACCGAAGCTAACAAAAGCAAAAGCAAAGCAGCTGTATGAGACGTTGCGCGAACATGAAGGATTA
GAACAAATTATGATTGCTTTGTCGCAATTTGGCTTTGGACCTCAATTATCGATGAAAATTTATCAAGTGTACAAAGATGA
AACGTTACAAATCATTCGCACAAATCCATATCAACTTGTCGAAGACGTTGAAGGAATTGGATTTGGTCGCGCTGATGATC
TCGGCTTGCAGCTCGGTATTTCGGGCAATCATCCGGATCGCATTCGGGCAGGTTGTTTATACGTCATAGAGCAACATTGC
ATGCAAGAAGGGCATGTGTATATGACGTATGAACAACTCCTTACAGAAGTGAAACAATTGTTAGAGGCGAAACGGCAAGA
AGTCGTTGAAGTTGCTTGCATTTCCCGTGAAATGATCCATTTATCTGAAGAAGGGAAGTTAATTGTGGAAGAAGATCGTT
TTTACATCCCTTCCTTGTATTTTGCGGAAAAAGGTATCGTGTCAAACGTGAAGCGGCTGCTTGAGCAAAAGGGCATGACT
ACGTTTTCTGAAGCCGAATTTTTACTAGCGCTCGGTGAATGGGAAGAAGAAGCAAACATTCAATATTCGCAAAAACAAAA
AGAGGCGATTCAACAAGCCCTTTGTTCCCCGTTGTTCATTTTAACAGGCGGACCAGGGACAGGAAAAACGACGGTCATTA
ATGGTATTGTTCATTTGTTCGCTAAATTGCACGGGCTATCGCTTGATCCGACGAGCTATGATACGGACGAGTCGTTTCCG
ATTTTACTTGCTGCTCCAACCGGCCGTGCAGCGAAGCGCATGACGGAATCGACAGGTTTGCCGGCGATGACGATTCATCG
TTTGCTCGGCTGGAGTGGTGACGGGTTTCAACGTGGGGAAGACGAACCGATTAACGGAAAGTTGTTAATTGTCGATGAAA
TGTCCATGGTCGATACGTGGCTAGCGAATCAGTTATTAAAGTCTGTTCCATCATCCATGCAAGTCATTTTCGTTGGCGAT
GAAGACCAATTACCGTCCGTCGGACCAGGACAAGTGCTGAAAGACTTGCTTCGCGCAAACGTCATTCCGACCGTTCGCTT
GACAGACATTTATCGCCAGGCAGAAGGTTCGTCGATCATTTCCCTTGCCCATGCGATTAAAGATGGAAACATTCCTCACG
ATTTGACGTTTCCACAAAAAGACCGTTCATTTATTCGTTGCACGGGCGGACAAGTCGTTGACGTCGTAAAAAAAGTAGCT
GAAAACGCAAAACAAAAAGGATATCGCGCAAAAGACGTTCAAGTGCTCGCACCGATGTATCGCGGTCATGCAGGAATTGA
TCGATTAAACGAAACGTTGCAACAGCTATTTAATCCAAAACATGATCATAAACGAGAGCTTACGTTTGGTGATGTTGTTT
ATCGCGTAGGCGATAAAGTGTTGCAGCTAGTCAATCAGCCGGATGAAAATGTGTTTAATGGCGATATCGGTGAGATCGTT
GCGATTTTCTATGCCAACGAAAACGTAGAAAAACAAGATCTCGTTGTCGTTTCGTTTGATGGAAACGAAGTGACATACCC
AAAACAAGAATTGAATCAAATTACGCACGCCTACTGTTGTTCGATTCATAAATCGCAAGGAAGCGAATTTCCGATCGTCA
TTTTGCCTGTTGTAAAAAGTTATTATCGCATGTTAAGGCGCAATTTATTGTACACAGCCATTACGCGCAGTAAACGATAT
TTAATTTTGTGCGGTGAAGAAGAAGCGTTCCAGCTTGGGGTCATGCGAACAGATGACGGAACGAGACAAACGACATTGTA
CGAAAAATTAACAAATACTATTTCGCCTGAGCAACAGCTGCTTCCGATGGAAGATGCAAACATCGGAATGGAAGGTGTTA
CCCCGTATGACTTTATGGAAAATGACGTAACATAA

Domains

Predicted by InterproScan.

AAA domain (AAA_30)

(341-548)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(589-657)

Helix-hairpin-helix containing domain (HHH_RecD2)

(156-247)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(676-724)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

60.886

100

0.614

Multiple sequence alignment