Detailed information    

insolico Bioinformatically predicted

Overview

Name   recJ   Type   Machinery gene
Locus tag   NSQ23_RS04550 Genome accession   NZ_CP150179
Coordinates   862425..864785 (+) Length   786 a.a.
NCBI ID   WP_339173317.1    Uniprot ID   -
Organism   Anoxybacillus sp. FSL W8-1294     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 857425..869785
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NSQ23_RS04530 (NSQ23_04530) spoVB 857859..859382 (-) 1524 WP_339173311.1 stage V sporulation protein B -
  NSQ23_RS04535 (NSQ23_04535) - 859468..859746 (+) 279 WP_339173313.1 post-transcriptional regulator -
  NSQ23_RS04540 (NSQ23_04540) secDF 859842..862088 (+) 2247 WP_339173315.1 protein translocase subunit SecDF -
  NSQ23_RS04545 (NSQ23_04545) - 862090..862371 (+) 282 Protein_820 cation transporter dimerization domain-containing protein -
  NSQ23_RS04550 (NSQ23_04550) recJ 862425..864785 (+) 2361 WP_339173317.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  NSQ23_RS04555 (NSQ23_04555) - 864751..865263 (+) 513 WP_339173320.1 adenine phosphoribosyltransferase -
  NSQ23_RS04560 (NSQ23_04560) - 865368..867566 (+) 2199 WP_339173322.1 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase -
  NSQ23_RS04565 (NSQ23_04565) dtd 867581..868021 (+) 441 WP_004889288.1 D-aminoacyl-tRNA deacylase -
  NSQ23_RS04570 (NSQ23_04570) - 868058..868231 (-) 174 WP_035018505.1 hypothetical protein -
  NSQ23_RS04575 (NSQ23_04575) - 868364..869671 (+) 1308 WP_339173328.1 N-acetylmuramoyl-L-alanine amidase -

Sequence

Protein


Download         Length: 786 a.a.        Molecular weight: 89068.98 Da        Isoelectric Point: 6.0681

>NTDB_id=965172 NSQ23_RS04550 WP_339173317.1 862425..864785(+) (recJ) [Anoxybacillus sp. FSL W8-1294]
MLASKTRWNIQQVNEQQVQMIAQALHITPLVASLLVSRGYHTVEAARSFFERKQSFHSPFLLNDMEKAVERIEKAITNDE
HILVFGDYDADGVSSTVVMVSALREKGANVSFYIPNRFTEGYGPNEQAFRLAKQQGVSLIITVDTGISALHEANVAKQLG
IDLIITDHHEPGPVLPEAYATIHPKISPNYPFKHLAGVGVAFKLAHALIGRVPYEWLDVVAIGTIADLVPLQDENHLLAR
LGIEQFRQTNRLGLQALCKQCGVSHTAVTEDTIAFMIGPRVNAAGRLDCADPAVQLLLTTDAHEADMLAEQIDAMNRERQ
QLVNEITEEAIQLVEQHYRDDRVLVVAKEGWNVGVIGIVASRLVEKFYRPTIVLSIDQEKGIAKGSARSIEGFDLFANLS
NCRDILPHFGGHPMAAGMTLSFHDVDELRRRLNEAAEQQLTDEHFIPITHIDLCCSIPDVSLELIEQMNRLAPFGMGNPK
PRVLFQHVQLDTLRKIGTDQNHLKLLLTEDGKTLEAIGFGFGNIGDEIAPNVRLSIVGELAINEWNNFRKPQLMIQDIAV
NEWQLFDMRHIRHPSKFMASLPKEKRLLIAFHRDTVDALQLSAYADEIVYVSNEQEAIIDVSGKYIVFLDLPPSQQIVKV
LLSCSLPERIYALFYQRENHFFSVLPTREHFKWLYSFLHKRSPFDVRRYADDLARSRGWTKETILFMIQVFKELGFITVE
NGIVSLVCDVQKRDLTESPSYRLKQAQAELEHMFLYSSYSQLKRWFDSLYEEENVNGFKTIRHDCS

Nucleotide


Download         Length: 2361 bp        

>NTDB_id=965172 NSQ23_RS04550 WP_339173317.1 862425..864785(+) (recJ) [Anoxybacillus sp. FSL W8-1294]
ATGTTAGCATCGAAAACCCGTTGGAATATTCAACAAGTAAACGAGCAACAAGTGCAAATGATTGCGCAAGCGCTACATAT
CACTCCGCTCGTTGCCTCATTGCTTGTTAGCCGCGGCTACCATACCGTTGAAGCCGCTCGTTCTTTTTTTGAGCGAAAGC
AATCATTTCACTCACCATTTTTATTAAACGATATGGAAAAAGCGGTTGAGCGAATAGAGAAAGCGATTACAAACGATGAA
CATATTCTCGTTTTCGGTGATTATGATGCCGATGGAGTAAGCAGTACAGTCGTCATGGTCAGCGCATTACGAGAAAAAGG
AGCGAATGTGTCTTTTTACATTCCGAATCGTTTTACAGAAGGATACGGACCAAATGAACAAGCGTTTCGACTAGCAAAAC
AACAAGGTGTTTCGCTTATCATTACAGTCGATACAGGCATTTCTGCTTTACATGAAGCCAACGTAGCGAAACAGCTTGGG
ATCGATTTAATTATTACCGATCATCATGAACCTGGTCCGGTACTACCGGAAGCGTACGCAACGATCCATCCGAAAATAAG
CCCGAATTATCCGTTTAAACATTTAGCTGGCGTCGGCGTAGCATTTAAGCTTGCTCATGCGCTTATCGGGCGCGTGCCGT
ATGAATGGTTGGACGTTGTTGCAATCGGGACAATTGCCGATCTCGTTCCGCTTCAAGACGAAAACCATTTACTCGCTCGG
TTGGGCATTGAACAATTTCGTCAAACGAACCGTCTCGGTTTACAGGCACTTTGTAAACAATGTGGCGTATCACATACAGC
GGTGACAGAAGATACGATTGCTTTCATGATCGGTCCGCGCGTTAATGCCGCCGGACGTCTCGATTGCGCTGATCCAGCTG
TTCAGCTGTTGTTGACGACAGATGCACACGAAGCGGACATGCTAGCGGAGCAAATTGATGCAATGAACCGCGAACGTCAA
CAACTTGTTAACGAGATAACCGAAGAAGCGATTCAACTTGTCGAGCAACATTATAGAGATGATCGTGTATTAGTTGTGGC
GAAAGAAGGATGGAATGTCGGTGTTATTGGCATTGTGGCATCTCGTTTAGTCGAAAAGTTTTATCGTCCGACGATCGTGT
TAAGCATTGATCAAGAAAAAGGAATAGCCAAAGGATCAGCGCGAAGTATTGAGGGATTTGACTTATTTGCGAACTTGTCA
AACTGTCGCGATATTTTGCCGCATTTTGGCGGGCATCCGATGGCGGCCGGAATGACGCTTTCTTTTCATGATGTAGATGA
ATTACGTCGTCGCCTAAACGAAGCAGCGGAGCAACAATTAACGGACGAACATTTCATTCCTATCACTCACATCGATTTAT
GTTGCTCCATCCCAGACGTTTCGCTTGAACTTATCGAACAAATGAATCGGCTTGCACCGTTTGGAATGGGGAATCCGAAG
CCGCGTGTCCTTTTCCAACATGTGCAACTCGATACGTTGCGAAAAATTGGAACGGATCAAAACCACTTAAAACTGTTGTT
AACGGAAGACGGAAAAACGTTAGAAGCGATCGGATTCGGTTTTGGCAACATCGGTGACGAAATTGCACCGAACGTTCGTC
TTTCGATCGTAGGGGAACTTGCTATTAACGAATGGAACAACTTTCGAAAGCCACAGTTAATGATTCAAGATATAGCAGTG
AATGAGTGGCAATTGTTTGATATGCGTCATATTCGTCATCCAAGTAAGTTCATGGCGTCGCTACCGAAAGAAAAGCGGTT
ATTGATCGCTTTTCATCGCGACACAGTAGACGCATTGCAATTGTCGGCATATGCAGATGAAATTGTATATGTGTCGAACG
AACAAGAAGCGATAATTGATGTAAGTGGAAAGTATATTGTTTTTCTTGATTTGCCTCCGTCACAGCAAATCGTTAAAGTT
TTATTAAGTTGTAGTTTACCCGAACGCATTTATGCGTTATTCTATCAAAGGGAGAATCACTTCTTTAGCGTATTGCCAAC
GCGTGAACATTTTAAGTGGTTATATTCATTTTTGCATAAGCGTAGCCCGTTTGATGTGCGACGTTACGCTGATGACTTAG
CTCGCTCGCGCGGATGGACAAAAGAAACGATTTTGTTTATGATTCAAGTGTTTAAAGAACTTGGCTTTATAACTGTTGAA
AACGGAATCGTTTCTTTAGTTTGCGATGTCCAAAAACGGGATTTAACGGAATCGCCTTCTTACCGACTGAAACAAGCGCA
GGCAGAGCTCGAGCATATGTTTTTATACTCATCTTATTCCCAACTGAAACGTTGGTTTGATTCATTGTATGAGGAGGAAA
ATGTCAATGGATTTAAAACAATACGTCACGATTGTTCCTGA

Domains

Predicted by InterproScan.

RecJ OB domain (RecJ_OB)

(451-557)

Single-strand DNA-specific exonuclease, C terminal domain (ssDNA-exonuc_C)

(564-766)

DHH family (DHH)

(81-224)

DHHA1 domain (DHHA1)

(313-435)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recJ Bacillus subtilis subsp. subtilis str. 168

54.311

98.855

0.537

Multiple sequence alignment