Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   NST58_RS16610 Genome accession   NZ_CP150178
Coordinates   3662104..3663855 (-) Length   583 a.a.
NCBI ID   WP_339243535.1    Uniprot ID   -
Organism   Paenibacillus sp. FSL R10-2796     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 3657104..3668855
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NST58_RS16595 (NST58_16595) - 3657653..3658588 (+) 936 WP_081383287.1 carbohydrate ABC transporter permease -
  NST58_RS16600 (NST58_16600) - 3658679..3660241 (+) 1563 WP_076130604.1 ABC transporter substrate-binding protein -
  NST58_RS16605 (NST58_16605) rcrQ 3660344..3662104 (-) 1761 WP_036677200.1 ABC transporter ATP-binding protein Regulator
  NST58_RS16610 (NST58_16610) rcrP 3662104..3663855 (-) 1752 WP_339243535.1 ABC transporter ATP-binding protein Regulator
  NST58_RS16615 (NST58_16615) - 3663975..3665030 (-) 1056 WP_081386330.1 HAMP domain-containing sensor histidine kinase -
  NST58_RS16620 (NST58_16620) - 3665027..3665701 (-) 675 WP_076184972.1 response regulator transcription factor -
  NST58_RS16625 (NST58_16625) - 3666027..3666992 (+) 966 WP_076219234.1 aldo/keto reductase -
  NST58_RS16630 (NST58_16630) - 3667029..3667880 (+) 852 WP_339243538.1 aldo/keto reductase -

Sequence

Protein


Download         Length: 583 a.a.        Molecular weight: 63983.47 Da        Isoelectric Point: 7.7380

>NTDB_id=965143 NST58_RS16610 WP_339243535.1 3662104..3663855(-) (rcrP) [Paenibacillus sp. FSL R10-2796]
MVTILKYLKPKEWALIGISILFIVTQVWLDLELPGYMSEITRLVQIPGSEMSEIIAAGGWMLLCALGSLATSIIVAGIAA
KIAANFSSRLRSKLFDKVQSFSMEEINNFSTASLITRSTNDITQVQMLIVIGPQLLVKAPILAVWAMLKITGKSWQWSLA
TGVAIGVLILIVGIVIVLVLPKFQKLQQLTDNLNRVARENLTGLRVIRAYNAESYQEDKFSVANSELTRTNLFANNVLSM
MMPSISLIMSGLSLAIYWIGAILIQNANGTAKMGLFSDMIVFSSYAMQVVMAFMMLIMIFILMPRAHVSAKRINEVLDTK
PSLENGSLTSSRANRLGEVEFKNVSFKYPDAEEYVIKDISFTVKKGETVAFIGSTGCGKSTVVNLIPRFYDATAGEVLVD
DINVNQYEQTALRNKMGYVSQKAILFGGTVSSNVAFGDNGSDLSSDVVDAIYTSQASDFVEKMEGSYEAHVSQGGTNLSG
GQKQRLSIARAIARRPEILIFDDSFSALDYKTDRKLRSELKKKSSGTTILIVAQRIGTIKDADKIIVLEAGRMAGMGTHD
ELMQTCDVYQEIAYSQLSKEELA

Nucleotide


Download         Length: 1752 bp        

>NTDB_id=965143 NST58_RS16610 WP_339243535.1 3662104..3663855(-) (rcrP) [Paenibacillus sp. FSL R10-2796]
ATGGTAACTATACTTAAGTACTTAAAACCGAAGGAATGGGCCCTAATCGGTATCAGCATCCTATTCATTGTCACACAGGT
ATGGCTGGATCTGGAATTGCCCGGTTATATGAGCGAGATTACTCGTCTTGTACAGATACCAGGGAGTGAAATGAGCGAAA
TCATTGCAGCCGGAGGCTGGATGTTGCTCTGTGCCCTTGGCAGCTTAGCCACATCAATTATAGTGGCAGGGATCGCCGCT
AAAATTGCCGCCAACTTCTCTTCAAGATTACGCTCCAAATTGTTTGATAAGGTACAGTCTTTCTCTATGGAAGAAATCAA
CAACTTCTCTACAGCTAGTTTAATTACCCGTTCAACAAATGACATTACACAAGTGCAAATGCTGATTGTCATCGGTCCGC
AACTGCTGGTGAAGGCTCCCATCCTTGCCGTTTGGGCAATGCTCAAAATTACAGGCAAGAGTTGGCAGTGGTCGCTTGCT
ACCGGTGTCGCCATTGGGGTATTGATTCTTATTGTCGGCATAGTGATCGTGCTAGTGCTTCCGAAATTCCAAAAATTGCA
GCAACTGACTGATAATCTTAATCGTGTTGCAAGAGAGAATCTTACCGGCCTTCGTGTCATTCGTGCGTATAATGCGGAAA
GCTACCAGGAAGATAAATTTAGTGTAGCCAACAGCGAGCTTACCCGAACGAATTTATTCGCCAATAATGTACTGTCCATG
ATGATGCCAAGTATTTCTCTGATTATGAGCGGTTTAAGTCTCGCAATATATTGGATTGGTGCTATTTTGATTCAAAATGC
CAATGGTACGGCGAAGATGGGCTTATTTTCAGATATGATTGTCTTCTCATCCTATGCGATGCAGGTGGTTATGGCATTCA
TGATGCTGATCATGATTTTTATCCTGATGCCTCGTGCCCATGTATCCGCTAAAAGAATCAATGAAGTGCTGGATACTAAG
CCAAGCTTAGAGAACGGATCACTTACTTCCTCCAGGGCAAATCGGTTGGGTGAGGTCGAATTCAAAAATGTCAGCTTTAA
ATATCCGGATGCAGAAGAATACGTTATTAAAGATATCAGCTTTACGGTGAAAAAAGGAGAAACTGTAGCCTTTATCGGTT
CAACCGGATGCGGAAAAAGTACCGTCGTGAACCTGATTCCTCGCTTTTATGATGCTACAGCAGGTGAAGTGTTGGTGGAT
GATATTAATGTTAACCAATATGAGCAAACTGCACTGCGCAATAAAATGGGATATGTATCTCAGAAAGCGATTTTGTTTGG
CGGCACGGTGAGCTCTAATGTTGCTTTTGGCGATAATGGCAGTGATCTGTCCTCTGATGTTGTTGATGCCATTTACACCT
CTCAAGCTTCAGATTTTGTTGAAAAGATGGAAGGAAGCTACGAGGCTCATGTCTCTCAAGGCGGTACAAACTTGTCTGGC
GGTCAAAAACAACGTCTTTCCATTGCCCGAGCCATTGCCCGTCGTCCTGAAATATTAATCTTCGACGATTCCTTCTCAGC
GCTTGATTATAAGACGGATCGCAAATTGCGAAGTGAATTGAAGAAAAAATCTAGCGGTACAACGATACTAATCGTTGCCC
AACGGATCGGTACAATCAAAGACGCAGACAAAATCATTGTACTGGAAGCCGGACGAATGGCAGGCATGGGAACACATGAT
GAATTGATGCAGACCTGTGATGTCTACCAAGAGATTGCTTACTCACAACTTTCAAAGGAGGAACTAGCTTAA

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(17-293)

ABC transporter (ABC_tran)

(357-504)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

51.678

100

0.528

Multiple sequence alignment