Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   AAA995_RS08390 Genome accession   NZ_AP028877
Coordinates   1647876..1649147 (+) Length   423 a.a.
NCBI ID   WP_001113212.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain 21P20     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1642876..1654147
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAA995_RS08355 (SP21P20_16650) - 1643942..1644370 (-) 429 WP_000418156.1 NUDIX hydrolase -
  AAA995_RS08360 (SP21P20_16660) - 1644351..1645439 (-) 1089 WP_000719724.1 site-2 protease family protein -
  AAA995_RS08365 (SP21P20_16670) - 1645458..1645928 (-) 471 WP_000257089.1 DUF3013 family protein -
  AAA995_RS08370 (SP21P20_16680) - 1646219..1646671 (-) 453 WP_000961810.1 type II toxin-antitoxin system HicB family antitoxin -
  AAA995_RS08375 (SP21P20_16690) - 1646708..1646887 (-) 180 WP_001132282.1 type II toxin-antitoxin system HicA family toxin -
  AAA995_RS08380 (SP21P20_16700) - 1647024..1647203 (-) 180 WP_001048906.1 hypothetical protein -
  AAA995_RS08385 (SP21P20_16710) - 1647367..1647606 (-) 240 WP_000818078.1 hypothetical protein -
  AAA995_RS08390 (SP21P20_16720) rarA 1647876..1649147 (+) 1272 WP_001113212.1 replication-associated recombination protein A Machinery gene
  AAA995_RS08400 (SP21P20_16730) - 1649693..1651012 (-) 1320 WP_000502553.1 glycoside hydrolase family 32 protein -
  AAA995_RS08405 (SP21P20_16740) - 1651022..1652638 (-) 1617 WP_000669745.1 ABC transporter substrate-binding protein -
  AAA995_RS08410 (SP21P20_16750) - 1652667..1653557 (-) 891 WP_000797961.1 carbohydrate ABC transporter permease -

Sequence

Protein


Download         Length: 423 a.a.        Molecular weight: 47013.48 Da        Isoelectric Point: 5.9471

>NTDB_id=96514 AAA995_RS08390 WP_001113212.1 1647876..1649147(+) (rarA) [Streptococcus pneumoniae strain 21P20]
MPDNLALRMRPKTIDQVIGQEHLVGPGKIIRRMVEANRLSSMILYGPPGIGKTSIASAIAGTTKYAFRTFNATVDSKKRL
QEISEEAKFSGGLVLLLDEIHRLDKTKQDFLLPLLESGLVIMIGATTENPFFSVTPAIRSRVQIFELEPLSNQDVKEALQ
IALSNPERGFDFPIELDEDALDFIATSTNGDLRSAFNSLDLAVLSTPENDEGIRHITLDIMENSLQRSYITMDKDGDGHY
DVLSALQKSIRGSDVDASLHYTARLIEAGDLPSLARRLTVIAYEDIGLANPEAQIHTVTALDAAQKIGFPEARILIANVV
IDLALSPKSNSAYVAMDKALADLKTSGHLPIPRHLRDGHYSGSKELGNAQDYLYPHNYPGNWIKQDYLPEKIRNHHYFQA
EDTGKYERALAQRKEAIDRLRKI

Nucleotide


Download         Length: 1272 bp        

>NTDB_id=96514 AAA995_RS08390 WP_001113212.1 1647876..1649147(+) (rarA) [Streptococcus pneumoniae strain 21P20]
ATGCCAGACAATCTCGCGCTTCGCATGCGCCCTAAAACCATCGACCAGGTCATCGGTCAGGAGCATCTGGTCGGACCTGG
AAAAATCATCCGCCGCATGGTGGAAGCCAACCGCCTGTCCTCCATGATTCTATATGGCCCTCCGGGAATCGGCAAAACCA
GTATTGCCTCTGCCATCGCTGGAACGACCAAGTATGCCTTTCGAACTTTCAATGCGACAGTTGATAGTAAAAAGCGACTG
CAAGAAATCTCGGAAGAAGCTAAATTTTCTGGTGGTCTCGTCCTATTGCTAGACGAAATTCATCGACTAGATAAGACCAA
GCAAGACTTCCTCTTGCCTCTCTTGGAAAGTGGACTGGTCATCATGATTGGAGCAACGACTGAAAATCCTTTCTTCTCTG
TCACTCCTGCCATTCGTAGCCGTGTTCAAATTTTCGAGTTGGAACCTCTGTCTAACCAAGACGTCAAAGAGGCCCTGCAG
ATAGCTCTAAGTAACCCTGAACGTGGTTTTGATTTTCCAATAGAACTAGATGAGGATGCGCTGGATTTCATCGCAACCTC
TACAAACGGAGACCTTCGCTCTGCCTTTAACTCACTGGACTTGGCTGTTCTCTCTACCCCTGAGAATGACGAGGGCATTC
GCCACATCACCTTAGACATCATGGAAAATAGTCTTCAGAGAAGCTACATCACTATGGACAAGGATGGAGACGGTCACTAT
GATGTTCTATCTGCCCTGCAAAAGTCTATTCGTGGCTCAGATGTGGATGCCAGTCTCCACTATACTGCCCGCTTGATTGA
GGCTGGGGATCTGCCTAGTCTCGCTCGTCGCTTGACTGTTATCGCCTATGAAGATATCGGCTTAGCCAATCCTGAGGCCC
AGATTCATACCGTGACTGCTCTGGATGCTGCCCAGAAGATTGGGTTCCCAGAAGCCCGCATTCTCATTGCCAATGTCGTG
ATTGATTTGGCCCTTTCTCCAAAATCCAACTCAGCCTATGTAGCTATGGATAAGGCACTTGCTGACCTCAAAACATCAGG
GCACTTGCCTATTCCGCGACACCTGCGTGATGGGCACTACAGTGGAAGCAAGGAACTGGGGAATGCCCAAGACTATCTCT
ATCCACACAACTATCCTGGAAATTGGATCAAGCAAGACTATCTGCCAGAAAAAATTCGTAATCATCACTATTTCCAAGCA
GAAGATACTGGTAAATATGAACGGGCTTTGGCTCAAAGAAAGGAAGCTATCGATCGTTTGCGAAAAATCTGA

Domains

Predicted by InterProScan.

MgsA AAA+ ATPase C terminal (MgsA_C)

(252-416)

AAA C-terminal domain (AAA_assoc_2)

(173-251)

ATPase family associated with various cellular activities (AAA) (AAA)

(42-144)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

57.279

99.054

0.567

Multiple sequence alignment