Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   AAA995_RS07265 Genome accession   NZ_AP028877
Coordinates   1429585..1430307 (-) Length   240 a.a.
NCBI ID   WP_001010369.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain 21P20     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1424585..1435307
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAA995_RS07255 (SP21P20_14490) - 1427159..1428325 (-) 1167 WP_000521373.1 MalY/PatB family protein -
  AAA995_RS07260 (SP21P20_14500) - 1428333..1429427 (-) 1095 WP_000031958.1 cystathionine gamma-synthase -
  AAA995_RS07265 (SP21P20_14510) rcrP 1429585..1430307 (-) 723 WP_001010369.1 ATP-binding cassette domain-containing protein Regulator
  AAA995_RS07270 (SP21P20_14520) - 1430332..1431267 (-) 936 WP_000768992.1 ABC transporter ATP-binding protein -
  AAA995_RS07275 (SP21P20_14530) amiA 1431439..1433397 (-) 1959 WP_000748887.1 peptide ABC transporter substrate-binding protein Regulator
  AAA995_RS07280 (SP21P20_14540) - 1433601..1435223 (-) 1623 WP_000017793.1 polysaccharide biosynthesis protein -

Sequence

Protein


Download         Length: 240 a.a.        Molecular weight: 27335.22 Da        Isoelectric Point: 5.2027

>NTDB_id=96502 AAA995_RS07265 WP_001010369.1 1429585..1430307(-) (rcrP) [Streptococcus pneumoniae strain 21P20]
MNFNHVYFGYDENRPVLKDITCSIFKGQKIAFVGPSGSGKSTIVRLLEQFYKPLSGDILMEQSSIYDFNLKEWRSKIAWV
SQNNAVLSGSIRDNLCLGLNRLVTDDELMKVLDLVSLGDEIRSMKEGLDTEVGERGRFLSGGQSQRLQIARTYLKDAEIL
IFDESTANLDAYSEYAIISILYSALKEKTVVIIAHRLSTVKDVDCIFFLEERKITGSGTHKELLENHERYARFVQEQMIE

Nucleotide


Download         Length: 723 bp        

>NTDB_id=96502 AAA995_RS07265 WP_001010369.1 1429585..1430307(-) (rcrP) [Streptococcus pneumoniae strain 21P20]
TTGAATTTTAACCATGTCTATTTTGGTTATGATGAAAATCGACCTGTCTTAAAGGATATTACTTGTTCAATTTTCAAGGG
GCAAAAAATTGCTTTTGTTGGACCATCTGGATCAGGAAAATCAACGATTGTGCGTTTGTTAGAGCAGTTTTATAAACCGC
TTTCAGGAGATATTCTAATGGAGCAATCAAGTATATATGATTTTAACTTAAAAGAATGGAGAAGTAAAATCGCTTGGGTT
TCACAAAATAATGCAGTCTTATCTGGCAGTATTCGTGACAATCTTTGTCTCGGTTTGAATCGCTTAGTAACTGATGATGA
ATTGATGAAAGTGCTAGACTTAGTATCACTAGGTGATGAGATTCGCTCCATGAAAGAGGGACTAGATACTGAAGTTGGTG
AACGCGGACGATTCTTGTCAGGGGGGCAAAGCCAAAGACTTCAAATAGCTAGAACCTACTTAAAAGATGCTGAAATTCTT
ATATTTGATGAATCCACTGCTAATCTTGATGCGTATTCTGAGTATGCGATTATCAGTATCCTCTATTCTGCATTAAAGGA
GAAGACGGTTGTGATTATAGCGCATCGTTTGTCAACGGTAAAAGATGTGGATTGTATTTTCTTCTTAGAGGAGAGGAAAA
TCACTGGCTCAGGAACTCATAAGGAACTACTGGAAAATCATGAGCGTTATGCTCGTTTTGTGCAGGAGCAAATGATAGAG
TGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(17-167)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

36.402

99.583

0.363

Multiple sequence alignment