Detailed information    

insolico Bioinformatically predicted

Overview

Name   recJ   Type   Machinery gene
Locus tag   NSU16_RS13430 Genome accession   NZ_CP150176
Coordinates   2614813..2617173 (-) Length   786 a.a.
NCBI ID   WP_339191154.1    Uniprot ID   -
Organism   Bacillus sp. FSL K6-1003     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2609813..2622173
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NSU16_RS13410 (NSU16_13410) - 2609890..2611443 (+) 1554 WP_339191148.1 SH3 domain-containing protein -
  NSU16_RS13415 (NSU16_13415) dtd 2611470..2611910 (-) 441 WP_168748346.1 D-aminoacyl-tRNA deacylase -
  NSU16_RS13420 (NSU16_13420) relA 2611923..2614127 (-) 2205 WP_339191151.1 GTP diphosphokinase -
  NSU16_RS13425 (NSU16_13425) - 2614295..2614807 (-) 513 WP_010335123.1 adenine phosphoribosyltransferase -
  NSU16_RS13430 (NSU16_13430) recJ 2614813..2617173 (-) 2361 WP_339191154.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  NSU16_RS13435 (NSU16_13435) - 2617240..2617575 (-) 336 WP_010335125.1 lipopolysaccharide assembly LapA domain-containing protein -
  NSU16_RS13440 (NSU16_13440) - 2617652..2618149 (-) 498 WP_268448753.1 cation:proton antiporter regulatory subunit -
  NSU16_RS13445 (NSU16_13445) secDF 2618308..2620521 (-) 2214 WP_339191159.1 protein translocase subunit SecDF -
  NSU16_RS13450 (NSU16_13450) - 2620559..2620855 (-) 297 WP_010335127.1 post-transcriptional regulator -

Sequence

Protein


Download         Length: 786 a.a.        Molecular weight: 88434.09 Da        Isoelectric Point: 5.0189

>NTDB_id=965018 NSU16_RS13430 WP_339191154.1 2614813..2617173(-) (recJ) [Bacillus sp. FSL K6-1003]
MLASKMRWEIQRPDQEKVKSLTEQLDITPLVASLLVKRGFDTAESARLFLHTKDAEFYDPYEMKGMKEAVERIKQAISQQ
EQIMIYGDYDADGVTSTSVMLHTLQKLSAQVDFYIPDRFKEGYGPNEQAFRSIKERGFSLIITVDTGIAAVHEAKVAKEL
GLDVIITDHHEPGPELPDVHAIVHPKQPGCTYPFKELAGVGVAFKLAHALLGEWPDELLDLAAIGTIADLVPLHDENRLI
ATLGLEKLRRTKRLGLKELIKLSGGDIGEANEETVGFQLAPRLNAVGRIEQADPAVHLLMSEDLFEAEELAAEIDQLNKE
RQKMVSKMTDEAIEMVEQEGLTQTAIVVAKAGWNPGVVGIVASKLVDRFYRPAIVLGIDEEKGIAKGSARSIRGFNLFES
LSECRDILPHFGGHPMAAGMTLNAEDVPELRNRLNEIADHTLTEEDFIPVQEVDLVCSVEDITVESITEMNLLSPFGMLN
PKPHVMVENAVLEDVRKIGANKNHVKMTIRNDSSQLDCVGFNKGELEENIVPGSKISIVGEMSINEWNNRKKPQLMIKDA
AVAEWQLFDLRGKRTWKDTLSALPSDKRVIVSFKEETKALLQSEDFRHDVHVISSEDQAKACELDNAYIVLLDSPPSLDM
LARLLEGKAPERIYFIFLNHEEHFLSSFPARDHFKWYYAFLLKRGTFDLNKHGSELARHKGWSVETINFMTKVFFDLGFV
KIENGVLSVISGAKKRDLTDSQTYQAKQQLMELDQKLNYSAAEELKEWLNKLMKQDSEAYESTRRT

Nucleotide


Download         Length: 2361 bp        

>NTDB_id=965018 NSU16_RS13430 WP_339191154.1 2614813..2617173(-) (recJ) [Bacillus sp. FSL K6-1003]
ATGTTAGCGTCAAAAATGCGATGGGAAATCCAGAGACCAGATCAGGAAAAGGTCAAATCACTCACAGAACAATTGGACAT
AACACCTCTTGTTGCGTCGCTGCTTGTAAAAAGAGGCTTTGATACGGCAGAAAGCGCGAGACTGTTTTTACATACAAAGG
ATGCCGAATTCTATGATCCCTATGAGATGAAGGGGATGAAAGAAGCGGTTGAACGAATAAAACAGGCGATTTCACAACAA
GAACAGATTATGATATATGGCGATTATGATGCCGATGGAGTTACCAGTACGTCAGTGATGCTGCACACTTTGCAAAAGCT
GTCAGCGCAAGTTGATTTTTATATACCTGACCGGTTTAAAGAAGGCTACGGCCCCAATGAACAGGCGTTTCGTTCGATTA
AAGAACGAGGCTTCTCACTCATTATTACGGTTGATACGGGGATTGCCGCTGTCCATGAAGCGAAGGTAGCAAAGGAACTT
GGCTTAGATGTCATCATTACCGACCACCATGAGCCTGGACCAGAGCTTCCGGATGTTCATGCGATCGTTCACCCGAAGCA
GCCTGGCTGCACCTATCCTTTTAAGGAGCTTGCAGGAGTGGGAGTAGCGTTTAAGCTTGCCCACGCATTATTGGGCGAAT
GGCCAGATGAACTTCTTGACCTGGCGGCAATCGGCACCATTGCCGATCTAGTTCCGCTGCATGATGAAAACAGATTAATT
GCAACATTAGGTCTCGAAAAGCTCCGGCGGACGAAACGGCTTGGCTTAAAAGAGCTGATTAAGCTCTCAGGCGGAGACAT
CGGAGAAGCGAACGAAGAAACCGTCGGATTTCAGCTCGCACCGAGACTGAATGCAGTCGGAAGAATTGAACAGGCCGATC
CTGCTGTTCATCTGTTGATGTCAGAGGACCTGTTTGAAGCGGAAGAGCTTGCCGCTGAAATCGATCAGCTTAATAAAGAA
CGGCAAAAGATGGTCAGTAAAATGACGGATGAAGCGATTGAAATGGTTGAACAAGAAGGGCTTACTCAAACTGCAATTGT
CGTGGCAAAAGCAGGGTGGAATCCCGGAGTCGTCGGAATTGTAGCTTCAAAGCTTGTAGACCGTTTTTACCGCCCGGCCA
TTGTCCTTGGAATTGATGAAGAAAAAGGGATCGCCAAAGGTTCGGCACGAAGCATTAGGGGATTTAATTTGTTTGAAAGC
CTTTCTGAATGCAGAGATATTCTTCCGCACTTTGGAGGCCATCCAATGGCGGCTGGCATGACGCTGAATGCCGAGGATGT
GCCGGAATTGCGGAACAGGCTGAATGAGATAGCTGACCATACGCTTACGGAAGAAGATTTTATTCCTGTACAGGAAGTAG
ACCTCGTATGCAGCGTGGAGGACATTACGGTTGAAAGCATCACAGAGATGAATCTGCTTTCTCCCTTCGGCATGCTGAAC
CCGAAACCGCATGTAATGGTAGAAAACGCAGTGCTGGAAGATGTCCGCAAAATCGGGGCGAATAAAAATCATGTCAAAAT
GACGATTAGAAACGATTCCTCCCAGCTTGACTGCGTCGGTTTCAATAAAGGCGAGCTTGAGGAAAATATTGTGCCCGGCT
CAAAAATTTCGATTGTTGGCGAAATGTCGATCAACGAATGGAATAACAGAAAAAAACCTCAGCTGATGATCAAGGATGCG
GCTGTTGCTGAATGGCAGCTGTTTGACTTAAGAGGAAAACGCACGTGGAAAGATACGCTTTCCGCCCTTCCGTCTGATAA
ACGAGTCATTGTCTCCTTCAAAGAAGAAACCAAAGCGCTTCTTCAGTCTGAAGATTTTCGCCATGACGTGCACGTTATCA
GTTCTGAAGACCAAGCGAAGGCATGTGAACTTGACAATGCATATATTGTATTACTGGATTCTCCGCCTTCGCTGGACATG
CTCGCACGTTTGCTAGAAGGCAAAGCGCCTGAGCGGATTTACTTCATCTTTCTCAATCATGAGGAACACTTTTTATCATC
TTTTCCGGCAAGAGACCACTTTAAATGGTATTATGCATTCTTGCTGAAAAGAGGCACTTTTGACTTGAATAAACACGGCT
CAGAGCTTGCGAGGCATAAAGGCTGGTCGGTTGAAACAATCAATTTCATGACAAAGGTGTTTTTTGATCTCGGTTTTGTT
AAAATAGAGAATGGTGTGCTGTCTGTAATAAGCGGAGCGAAAAAACGCGATTTAACAGACTCGCAAACATATCAAGCAAA
ACAGCAGCTGATGGAGCTGGATCAAAAGCTGAATTATTCTGCGGCTGAAGAGCTGAAGGAATGGCTGAATAAGCTGATGA
AACAAGATTCAGAGGCTTATGAAAGTACGAGGAGGACATAA

Domains

Predicted by InterproScan.

DHH family (DHH)

(82-226)

Single-strand DNA-specific exonuclease, C terminal domain (ssDNA-exonuc_C)

(566-769)

DHHA1 domain (DHHA1)

(315-437)

RecJ OB domain (RecJ_OB)

(453-559)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recJ Bacillus subtilis subsp. subtilis str. 168

93.257

100

0.933

Multiple sequence alignment