Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   NSU16_RS13355 Genome accession   NZ_CP150176
Coordinates   2597686..2600082 (-) Length   798 a.a.
NCBI ID   WP_326333910.1    Uniprot ID   -
Organism   Bacillus sp. FSL K6-1003     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2592686..2605082
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NSU16_RS13335 (NSU16_13335) - 2595560..2596621 (-) 1062 WP_339191139.1 AI-2E family transporter -
  NSU16_RS13340 (NSU16_13340) - 2596745..2596879 (-) 135 WP_010335109.1 YrzQ family protein -
  NSU16_RS13345 (NSU16_13345) - 2596901..2597092 (-) 192 WP_010335110.1 hypothetical protein -
  NSU16_RS13350 (NSU16_13350) - 2597103..2597582 (-) 480 WP_229146667.1 PRC-barrel domain-containing protein -
  NSU16_RS13355 (NSU16_13355) recD2 2597686..2600082 (-) 2397 WP_326333910.1 ATP-dependent RecD-like DNA helicase Machinery gene
  NSU16_RS13360 (NSU16_13360) - 2600107..2600763 (-) 657 WP_339191142.1 tetratricopeptide repeat protein -
  NSU16_RS13365 (NSU16_13365) mnmA 2600812..2601927 (-) 1116 WP_286058251.1 tRNA 2-thiouridine(34) synthase MnmA -
  NSU16_RS13370 (NSU16_13370) - 2601956..2603098 (-) 1143 WP_339191145.1 cysteine desulfurase family protein -
  NSU16_RS13375 (NSU16_13375) cymR 2603118..2603534 (-) 417 WP_003225879.1 cysteine metabolism transcriptional regulator CymR -
  NSU16_RS13380 (NSU16_13380) - 2603736..2605001 (+) 1266 WP_339192694.1 replication-associated recombination protein A -

Sequence

Protein


Download         Length: 798 a.a.        Molecular weight: 89048.70 Da        Isoelectric Point: 5.0274

>NTDB_id=965017 NSU16_RS13355 WP_326333910.1 2597686..2600082(-) (recD2) [Bacillus sp. FSL K6-1003]
MQQHPDQLKMEEEPFLKGTVNTVIYHNDANLYTVLKVKVTETSEAIEDKVVSVTGYFPALQEEETYTFYGKTVTHPKFGL
QFQAEHFKKEIPTTKEGVIQYLSSDLFEGIGKKTAEEIVKKLGDRAINKILADSSVLYDVPRLSKKKADTLAGALQRHQG
LEQIMISLNQFGFGPQLSMKIYQAYESETLEKIQENPYQLVRDVEGIGFGKADELGGRMGLSGNHPERVKAAILYTLETT
CLSEGHTYIETKQLIIETQTLLNQSAADGQRIAEMDAANAIIALGENKDIVIEDERCYFPSLFFAEQNVAKRVKQIASQT
EYDDQFPESEFLMALGELEERMNVQYAPSQKEAIQKALSSPMLLLTGGPGTGKTTVIRGIVELYGELHGVSLDPSDYKKD
EAFPIVLAAPTGRAAKRMSESTGLPAVTIHRLLGWNGAEGFTHTEDQPIEGKLLIIDEASMLDIWLANHLFKAIPDHIQI
IIVGDEDQLPSVGPGQVLRDLLASQVIPTVRLTDIYRQAEGSSIVELAHEMKNGLLPNNLTAPTKDRSFIRCGGSQIKEV
VEKVVANALKKGYTAKDIQVLAPMYRGKAGINELNVMLQDILNPPKEKRREIKFGDVVYRTGDKILQLVNQPENNVFNGD
IGEITSIFYAKENTEKEDMAVVSFDGNEMTFTKKDFSQFTHAYCCSIHKSQGSEFPIVVLPVVKGYYRMLRRNLLYTAIT
RAKKFLILCGEEEALEWGVKNNDATVRQTSLKNRLSAQVAEMDAELAALQKELPFSVHDANIGMEGITPFDFMKEEQL

Nucleotide


Download         Length: 2397 bp        

>NTDB_id=965017 NSU16_RS13355 WP_326333910.1 2597686..2600082(-) (recD2) [Bacillus sp. FSL K6-1003]
GTGCAGCAGCACCCGGATCAGCTGAAAATGGAGGAGGAGCCCTTTTTAAAAGGGACAGTAAACACCGTCATTTATCATAA
TGACGCCAATTTATATACGGTTCTGAAAGTGAAAGTCACAGAGACCTCCGAAGCTATTGAAGATAAAGTCGTATCCGTGA
CGGGCTACTTCCCTGCGCTTCAAGAAGAAGAGACCTACACGTTTTACGGAAAAACCGTTACTCACCCAAAGTTCGGACTG
CAATTTCAAGCTGAGCACTTCAAAAAGGAGATCCCGACAACAAAAGAAGGCGTCATTCAGTATTTGTCGAGCGATCTGTT
TGAAGGAATCGGTAAAAAAACCGCTGAAGAGATTGTGAAAAAGCTGGGTGACAGAGCGATTAATAAAATTTTGGCTGATT
CTTCAGTCCTTTATGATGTTCCGAGACTGTCAAAAAAGAAAGCTGACACCCTTGCCGGTGCCCTGCAACGGCATCAGGGA
CTGGAGCAAATTATGATTTCGCTGAATCAATTTGGCTTCGGCCCTCAGCTGTCTATGAAAATCTACCAGGCCTATGAATC
CGAGACGCTGGAAAAAATTCAGGAGAACCCTTATCAGCTTGTAAGAGATGTGGAAGGCATCGGGTTTGGAAAAGCAGATG
AGCTCGGCGGAAGAATGGGGCTCTCAGGGAATCATCCTGAGCGGGTAAAAGCGGCTATTTTATACACGCTAGAAACGACA
TGCCTGTCAGAAGGGCATACGTACATAGAAACGAAACAGCTGATTATCGAAACCCAAACGCTGTTAAACCAGTCAGCGGC
AGATGGGCAGCGCATTGCAGAAATGGATGCCGCTAACGCGATTATTGCGCTTGGAGAAAATAAGGATATTGTTATAGAAG
ATGAACGATGTTACTTTCCGTCGCTGTTTTTCGCTGAACAAAATGTGGCAAAGCGTGTGAAACAGATCGCAAGCCAAACT
GAATATGACGACCAGTTTCCAGAATCAGAATTTCTGATGGCTTTGGGAGAATTGGAAGAGCGTATGAATGTTCAGTACGC
GCCGAGTCAGAAGGAAGCGATACAAAAAGCGCTGTCGTCACCGATGCTTCTTTTAACGGGAGGACCGGGTACAGGAAAAA
CAACGGTAATCAGAGGCATTGTGGAATTGTATGGAGAACTTCACGGTGTTTCACTTGATCCGTCGGATTATAAAAAAGAT
GAAGCCTTTCCGATTGTGCTGGCCGCGCCTACAGGCAGAGCGGCGAAACGAATGAGTGAGTCAACTGGTCTTCCGGCTGT
TACGATACACCGGCTGCTCGGCTGGAACGGTGCGGAAGGATTTACTCATACAGAGGACCAGCCGATTGAAGGGAAGCTTT
TGATTATCGATGAAGCGAGTATGCTTGATATATGGCTTGCGAATCATTTGTTTAAAGCGATCCCTGATCATATTCAAATT
ATCATTGTCGGAGACGAAGACCAGCTGCCTTCCGTCGGACCCGGTCAAGTGCTCAGAGACCTTTTGGCATCCCAGGTGAT
TCCGACTGTAAGACTGACAGACATTTATCGACAAGCGGAAGGATCGTCCATTGTCGAGCTTGCCCACGAGATGAAAAACG
GGCTGCTTCCAAACAATCTGACTGCTCCGACAAAGGATCGCTCCTTTATTCGCTGCGGTGGTTCGCAAATTAAAGAAGTG
GTTGAGAAGGTTGTCGCGAATGCATTGAAAAAAGGATATACGGCAAAAGATATTCAGGTCCTCGCCCCGATGTATAGAGG
GAAAGCTGGAATCAATGAGCTGAATGTGATGCTGCAGGATATTTTAAACCCTCCAAAAGAAAAGCGGAGGGAAATTAAGT
TCGGCGACGTTGTCTATAGAACCGGGGATAAAATTTTGCAACTTGTCAATCAGCCGGAAAACAATGTGTTTAACGGCGAC
ATTGGAGAAATCACTTCCATTTTCTATGCGAAGGAAAACACAGAAAAAGAAGACATGGCTGTTGTCTCTTTTGACGGCAA
TGAAATGACGTTTACGAAAAAAGACTTCAGTCAGTTTACTCATGCGTATTGCTGCTCTATTCATAAATCGCAGGGCAGTG
AATTTCCGATCGTGGTTCTTCCTGTAGTGAAGGGCTACTATAGAATGCTCAGAAGAAACCTTCTATATACCGCTATCACG
AGGGCGAAGAAATTTCTCATTTTATGCGGGGAAGAGGAAGCGCTGGAGTGGGGCGTGAAAAATAATGACGCGACTGTCAG
ACAGACCTCACTAAAAAACAGGCTGTCAGCGCAGGTGGCTGAAATGGATGCTGAGCTTGCAGCTTTGCAAAAAGAGCTCC
CGTTCAGCGTGCACGACGCAAATATCGGAATGGAAGGCATTACGCCATTCGATTTTATGAAAGAAGAACAGCTGTAA

Domains

Predicted by InterproScan.

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(594-662)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(681-729)

AAA domain (AAA_30)

(346-553)

Helix-hairpin-helix containing domain (HHH_RecD2)

(158-248)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

96.236

99.875

0.961

Multiple sequence alignment