Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   NSU16_RS08685 Genome accession   NZ_CP150176
Coordinates   1676877..1677656 (+) Length   259 a.a.
NCBI ID   WP_003220850.1    Uniprot ID   G4NSM6
Organism   Bacillus sp. FSL K6-1003     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1671877..1682656
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NSU16_RS08665 (NSU16_08665) trmFO 1672571..1673878 (+) 1308 WP_268450369.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  NSU16_RS08670 (NSU16_08670) xerC 1673946..1674860 (+) 915 WP_229150057.1 tyrosine recombinase XerC -
  NSU16_RS08675 (NSU16_08675) clpQ 1674873..1675418 (+) 546 WP_010334241.1 ATP-dependent protease subunit ClpQ -
  NSU16_RS08680 (NSU16_08680) hslU 1675426..1676838 (+) 1413 WP_256203217.1 HslU--HslV peptidase ATPase subunit -
  NSU16_RS08685 (NSU16_08685) codY 1676877..1677656 (+) 780 WP_003220850.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  NSU16_RS08690 (NSU16_08690) flgB 1678039..1678428 (+) 390 WP_010334244.1 flagellar basal body rod protein FlgB -
  NSU16_RS08695 (NSU16_08695) flgC 1678428..1678880 (+) 453 WP_326330690.1 flagellar basal body rod protein FlgC -
  NSU16_RS08700 (NSU16_08700) fliE 1678891..1679211 (+) 321 WP_029441259.1 flagellar hook-basal body complex protein FliE -
  NSU16_RS08705 (NSU16_08705) fliF 1679257..1680867 (+) 1611 WP_010334246.1 flagellar basal-body MS-ring/collar protein FliF -
  NSU16_RS08710 (NSU16_08710) fliG 1680880..1681896 (+) 1017 WP_003231981.1 flagellar motor switch protein FliG -
  NSU16_RS08715 (NSU16_08715) fliH 1681889..1682641 (+) 753 WP_229150050.1 flagellar assembly protein FliH -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29013.22 Da        Isoelectric Point: 4.6514

>NTDB_id=964996 NSU16_RS08685 WP_003220850.1 1676877..1677656(+) (codY) [Bacillus sp. FSL K6-1003]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTKNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFNDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=964996 NSU16_RS08685 WP_003220850.1 1676877..1677656(+) (codY) [Bacillus sp. FSL K6-1003]
ATGGCTTTATTACAAAAAACAAGAATTATTAACTCCATGCTGCAAGCTGCGGCAGGGAAACCGGTTAACTTTAAAGAAAT
GGCGGAAACGCTTCGGGATGTAATTGATTCCAATATTTTCGTTGTGAGCCGCAGAGGAAAACTTCTCGGGTACTCTATCA
ACCAGCAAATTGAAAATGACCGTATGAAAAAAATGCTTGAGGATCGCCAATTCCCAGAGGAATATACGAAGAATCTGTTC
AACGTCCCTGAAACATCTTCTAACCTGGATATCAATAGTGAGTATACTGCTTTTCCTGTTGAAAACAGAGACTTGTTCCA
AGCTGGTTTAACAACAATTGTGCCGATCATCGGAGGCGGAGAAAGATTAGGTACACTCATTCTTTCACGTTTACAGGATC
AGTTTAATGATGATGATTTAATTCTTGCTGAATACGGCGCTACAGTTGTCGGAATGGAAATTCTGAGAGAAAAAGCAGAA
GAAATTGAAGAAGAAGCAAGAAGCAAAGCAGTCGTACAAATGGCAATCAGCTCTCTTTCTTATAGTGAGCTTGAAGCAAT
TGAACACATCTTTGAAGAGCTTGACGGAAACGAAGGCCTTCTTGTTGCAAGTAAGATTGCAGACCGTGTCGGCATTACTC
GCTCAGTTATTGTTAACGCACTCAGAAAGCTTGAAAGTGCTGGGGTAATTGAGTCAAGATCATTAGGCATGAAGGGTACT
TATATCAAAGTGCTGAACAACAAATTCCTGATTGAATTAGAAAATCTGAAATCGCATTAA

Domains

Predicted by InterproScan.

CodY helix-turn-helix domain (HTH_CodY)

(198-255)

CodY GAF-like domain (CodY)

(3-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NSM6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

100

100

1
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.451

98.456

0.467

Multiple sequence alignment