Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   NSU16_RS08655 Genome accession   NZ_CP150176
Coordinates   1669330..1670229 (+) Length   299 a.a.
NCBI ID   WP_268450366.1    Uniprot ID   -
Organism   Bacillus sp. FSL K6-1003     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1664330..1675229
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NSU16_RS08635 (NSU16_08635) - 1664999..1666729 (+) 1731 WP_339192518.1 hypothetical protein -
  NSU16_RS08640 (NSU16_08640) - 1666726..1667007 (+) 282 WP_010334234.1 FlhB-like flagellar biosynthesis protein -
  NSU16_RS08645 (NSU16_08645) sucC 1667181..1668338 (+) 1158 WP_010334235.1 ADP-forming succinate--CoA ligase subunit beta -
  NSU16_RS08650 (NSU16_08650) sucD 1668367..1669269 (+) 903 WP_010334236.1 succinate--CoA ligase subunit alpha -
  NSU16_RS08655 (NSU16_08655) dprA 1669330..1670229 (+) 900 WP_268450366.1 DNA-processing protein DprA Machinery gene
  NSU16_RS08660 (NSU16_08660) topA 1670420..1672495 (+) 2076 WP_029441257.1 type I DNA topoisomerase -
  NSU16_RS08665 (NSU16_08665) trmFO 1672571..1673878 (+) 1308 WP_268450369.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  NSU16_RS08670 (NSU16_08670) xerC 1673946..1674860 (+) 915 WP_229150057.1 tyrosine recombinase XerC -

Sequence

Protein


Download         Length: 299 a.a.        Molecular weight: 33022.19 Da        Isoelectric Point: 8.7232

>NTDB_id=964995 NSU16_RS08655 WP_268450366.1 1669330..1670229(+) (dprA) [Bacillus sp. FSL K6-1003]
MDQAAACLITCRINQLLSPSLLLKWWKADPSMSLSNPSCALETASHGKVKTAALKNKIEEQYPKLQHLLSVYHQQGIEVI
PISSDQYPFWLKTIYDPPPVLFAKGDISLLSQGRKIGIVGTRHPTAYGIQVVNHLTIELCHKKWVIVSGLASGIDGLSHA
ASIKAKGRTIGVIAGGFQNIYPRENLQLAEYMAKHHLLLSEHPPETKPQKWHFPMRNRIISGLSEGIIVVQGKEKSGSLI
TAYQALEQGREVFAVPGSVFDPYAGGPIKLIQEGAKAIWSAEDIYAELPERNVQYTEPF

Nucleotide


Download         Length: 900 bp        

>NTDB_id=964995 NSU16_RS08655 WP_268450366.1 1669330..1670229(+) (dprA) [Bacillus sp. FSL K6-1003]
TTGGATCAGGCCGCTGCCTGTTTAATCACTTGCAGAATCAATCAATTATTATCCCCATCTCTTCTATTAAAATGGTGGAA
AGCTGATCCGTCAATGTCACTGTCAAATCCTTCATGCGCATTAGAAACCGCTTCACATGGCAAAGTAAAGACTGCGGCAT
TAAAAAATAAAATAGAAGAACAATATCCCAAACTTCAGCATTTACTCTCTGTATACCATCAGCAAGGCATTGAAGTCATC
CCAATATCCTCAGATCAATATCCATTCTGGCTGAAAACCATTTATGATCCGCCTCCTGTGCTGTTTGCAAAAGGTGATAT
ATCCCTTCTTTCTCAAGGGCGTAAAATAGGAATTGTAGGTACGCGGCATCCGACAGCCTATGGAATCCAGGTTGTCAATC
ATCTTACAATAGAGCTTTGCCATAAAAAGTGGGTGATTGTCAGCGGGCTGGCGTCTGGGATTGACGGATTGTCCCATGCG
GCAAGTATTAAGGCGAAGGGGCGTACAATCGGAGTCATCGCAGGCGGATTTCAGAACATTTATCCTCGAGAAAATCTTCA
ATTAGCAGAATACATGGCTAAACACCATCTTCTTCTGTCAGAGCATCCACCTGAAACCAAACCCCAAAAATGGCATTTCC
CTATGAGAAACCGTATTATCAGCGGGTTAAGTGAGGGCATTATTGTTGTGCAGGGTAAAGAGAAAAGCGGTTCTTTGATT
ACCGCATATCAAGCGCTGGAACAAGGGAGAGAAGTATTTGCCGTACCTGGTTCTGTATTTGATCCTTACGCCGGAGGTCC
TATAAAATTGATCCAAGAGGGGGCTAAAGCCATATGGTCAGCAGAGGATATTTATGCAGAGCTTCCTGAGAGAAACGTTC
AATATACGGAACCCTTTTGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(73-278)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Bacillus subtilis subsp. subtilis str. 168

83.278

100

0.833

Multiple sequence alignment