Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   NSS75_RS08985 Genome accession   NZ_CP150175
Coordinates   1729180..1729959 (+) Length   259 a.a.
NCBI ID   WP_003220850.1    Uniprot ID   G4NSM6
Organism   Bacillus sp. FSL K6-1012     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1724180..1734959
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NSS75_RS08965 (NSS75_08965) trmFO 1724874..1726181 (+) 1308 WP_024121391.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  NSS75_RS08970 (NSS75_08970) xerC 1726249..1727163 (+) 915 WP_024121392.1 tyrosine recombinase XerC -
  NSS75_RS08975 (NSS75_08975) clpQ 1727176..1727721 (+) 546 WP_014663962.1 ATP-dependent protease subunit ClpQ -
  NSS75_RS08980 (NSS75_08980) hslU 1727729..1729141 (+) 1413 WP_255004726.1 HslU--HslV peptidase ATPase subunit -
  NSS75_RS08985 (NSS75_08985) codY 1729180..1729959 (+) 780 WP_003220850.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  NSS75_RS08990 (NSS75_08990) flgB 1730339..1730728 (+) 390 WP_010334244.1 flagellar basal body rod protein FlgB -
  NSS75_RS08995 (NSS75_08995) flgC 1730728..1731180 (+) 453 WP_024121394.1 flagellar basal body rod protein FlgC -
  NSS75_RS09000 (NSS75_09000) fliE 1731191..1731511 (+) 321 WP_339237602.1 flagellar hook-basal body complex protein FliE -
  NSS75_RS09005 (NSS75_09005) fliF 1731557..1733167 (+) 1611 WP_339237051.1 flagellar basal-body MS-ring/collar protein FliF -
  NSS75_RS09010 (NSS75_09010) fliG 1733180..1734196 (+) 1017 WP_003231981.1 flagellar motor switch protein FliG -
  NSS75_RS09015 (NSS75_09015) fliH 1734189..1734941 (+) 753 WP_024121397.1 flagellar assembly protein FliH -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29013.22 Da        Isoelectric Point: 4.6514

>NTDB_id=964915 NSS75_RS08985 WP_003220850.1 1729180..1729959(+) (codY) [Bacillus sp. FSL K6-1012]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTKNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFNDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=964915 NSS75_RS08985 WP_003220850.1 1729180..1729959(+) (codY) [Bacillus sp. FSL K6-1012]
ATGGCTTTATTACAAAAAACAAGAATTATTAACTCCATGCTGCAAGCTGCGGCAGGGAAACCGGTTAACTTTAAAGAAAT
GGCGGAAACGCTTCGGGATGTAATTGATTCCAATATTTTCGTTGTGAGCCGCAGAGGAAAACTGCTCGGCTACTCTATCA
ACCAGCAAATTGAAAATGACCGTATGAAAAAAATGCTTGAAGATCGCCAATTCCCAGAGGAATATACGAAGAATCTGTTC
AACGTCCCTGAAACATCTTCTAACCTGGATATCAACAGTGAGTATACTGCTTTCCCTGTTGAAAACAGAGACTTGTTCCA
AGCTGGTTTAACAACAATTGTGCCGATCATCGGAGGCGGAGAAAGATTAGGTACACTCATTCTTTCACGTTTACAGGATC
AATTTAATGATGATGATTTAATACTTGCTGAATACGGCGCTACAGTTGTCGGAATGGAAATTCTGAGAGAAAAAGCAGAA
GAAATTGAAGAAGAAGCAAGAAGCAAAGCAGTCGTACAAATGGCAATCAGCTCTCTTTCTTATAGTGAGCTAGAAGCAAT
TGAACACATCTTTGAAGAGCTTGACGGAAACGAAGGTCTCCTTGTTGCAAGTAAGATTGCAGACCGTGTCGGCATTACCC
GCTCAGTTATTGTTAACGCACTCAGAAAGCTTGAAAGCGCCGGTGTAATTGAGTCAAGATCATTAGGAATGAAGGGTACT
TATATTAAAGTGCTCAACAACAAATTCCTGATTGAATTAGAAAATCTAAAATCCCATTAA

Domains

Predicted by InterproScan.

CodY helix-turn-helix domain (HTH_CodY)

(198-255)

CodY GAF-like domain (CodY)

(3-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NSM6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

100

100

1
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.451

98.456

0.467

Multiple sequence alignment