Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   NSQ41_RS13665 Genome accession   NZ_CP150172
Coordinates   2815051..2817426 (-) Length   791 a.a.
NCBI ID   WP_130158151.1    Uniprot ID   -
Organism   Aeribacillus sp. FSL K6-8210     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2810051..2822426
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NSQ41_RS13645 (NSQ41_13645) - 2810229..2810495 (-) 267 WP_063387994.1 IreB family regulatory phosphoprotein -
  NSQ41_RS13650 (NSQ41_13650) alaS 2810567..2813203 (-) 2637 WP_339210152.1 alanine--tRNA ligase -
  NSQ41_RS13655 (NSQ41_13655) - 2813532..2814593 (-) 1062 WP_063387992.1 AI-2E family transporter -
  NSQ41_RS13660 (NSQ41_13660) - 2814666..2814851 (-) 186 WP_094246265.1 hypothetical protein -
  NSQ41_RS13665 (NSQ41_13665) recD2 2815051..2817426 (-) 2376 WP_130158151.1 ATP-dependent RecD-like DNA helicase Machinery gene
  NSQ41_RS13670 (NSQ41_13670) - 2817448..2818101 (-) 654 WP_063388167.1 tetratricopeptide repeat protein -
  NSQ41_RS13675 (NSQ41_13675) mnmA 2818183..2819298 (-) 1116 WP_339210153.1 tRNA 2-thiouridine(34) synthase MnmA -
  NSQ41_RS13680 (NSQ41_13680) - 2819314..2820459 (-) 1146 WP_130158149.1 cysteine desulfurase family protein -
  NSQ41_RS13685 (NSQ41_13685) - 2820478..2820897 (-) 420 WP_063387987.1 Rrf2 family transcriptional regulator -
  NSQ41_RS13690 (NSQ41_13690) - 2821033..2822310 (+) 1278 WP_063387986.1 replication-associated recombination protein A -

Sequence

Protein


Download         Length: 791 a.a.        Molecular weight: 89431.67 Da        Isoelectric Point: 5.1240

>NTDB_id=964797 NSQ41_RS13665 WP_130158151.1 2815051..2817426(-) (recD2) [Aeribacillus sp. FSL K6-8210]
MGGQQESLFHEESTPFVRGVIKHIVFQNEQNFYTVIKVKIEETNEQFEQDQVTVTGFFPLLQLHDSYTFFGAKKYHPKFG
VQFQAERFQKELPTTKEGVIQYLSSGLFKGIGKKTAEAIVNELGEHAISIILEDPDSLKRVKKLSKEKAKILAETLKEHQ
GLEGVLIGLNQLGIGPALGMKIYQLYREDTLKIIQKNPYQLVEDIEGIGFIRADEIGRELGISGNHPDRLKAACLFTIEQ
DAVKEGHVYVTKVQLMEKAKKLLTQNGEDISDQDIERIILELEEDRKIIVEEDRIYLPSLYYAEVGLANNIEEILTQNQF
QDMFPESEFLLELGKLEEKMNVQYAPSQKEAIQRAIHSPILLLTGGPGTGKTTVIKGIVEIYANLHGLSLNPKEYQKKEE
PFPIVLVAPTGRAAKRMAEATGLPAVTIHRLLGWNGSEGFEHNEDHPISGKLLIVDEVSMVDIWLMHQLFKSLPSDIQIV
LVGDEHQLPSVGPGQVLRDLIQSGRIPVVTLTDIYRQAEGSTIIDLAHSIRQGTLPANLLQTTQDRSFIPCTTSQIKEVI
TRVIENALKKGYSAKDIQVLAPMYRGIAGIDQLNEMLQEMLNPPSKEKREIKHGNVIYRIGDKVLQLVNQPDQNVFNGDI
GEIVSIFYAKENVEKEDMVVISYDGIEVTYTKQDFNQFTHAYCCSIHKAQGSEFPIVILPVVKGYFRMLRRNLIYTAVTR
SKQFLIMCGEWEALKMGVYNNQESMRQTTLKERLKTSELAELKEELPFPLEDANIGMENITPYDFMEEGEG

Nucleotide


Download         Length: 2376 bp        

>NTDB_id=964797 NSQ41_RS13665 WP_130158151.1 2815051..2817426(-) (recD2) [Aeribacillus sp. FSL K6-8210]
ATGGGCGGTCAACAGGAGAGTTTGTTTCATGAGGAAAGTACTCCTTTTGTTCGCGGAGTCATTAAACATATTGTGTTCCA
GAATGAGCAAAATTTTTATACTGTTATTAAAGTGAAAATTGAAGAGACGAATGAACAGTTTGAGCAAGATCAAGTGACCG
TGACGGGTTTTTTTCCTCTTCTCCAATTACATGACAGCTATACGTTTTTTGGCGCGAAAAAATACCATCCAAAATTCGGC
GTACAATTTCAAGCCGAGCGTTTTCAAAAGGAGCTTCCAACTACGAAAGAAGGAGTTATTCAATATTTATCAAGCGGGCT
TTTTAAAGGAATCGGCAAAAAAACAGCGGAAGCGATCGTGAATGAACTGGGCGAACATGCGATTTCGATTATTTTGGAGG
ATCCCGATTCATTAAAAAGAGTGAAGAAGCTTTCAAAGGAAAAAGCCAAAATACTGGCTGAAACTCTGAAGGAACATCAA
GGTTTAGAAGGGGTTTTAATCGGATTAAATCAGCTTGGCATTGGGCCTGCACTTGGGATGAAAATTTATCAGCTGTATCG
GGAGGATACGCTTAAAATCATTCAAAAAAACCCATATCAATTGGTGGAAGATATTGAAGGGATCGGCTTTATTCGAGCGG
ATGAAATTGGGAGAGAGCTTGGGATCTCCGGCAATCATCCCGACCGGCTGAAGGCGGCTTGTTTGTTCACTATTGAACAA
GATGCTGTAAAAGAAGGACATGTATATGTTACAAAAGTTCAGCTGATGGAAAAAGCGAAAAAATTGCTCACCCAAAATGG
AGAAGACATATCTGATCAGGATATTGAAAGAATCATTCTTGAATTGGAAGAAGATCGAAAAATTATCGTCGAGGAAGATC
GAATTTATTTACCCTCTCTTTACTATGCTGAAGTGGGACTTGCCAATAACATTGAAGAAATTTTAACCCAAAACCAATTT
CAAGATATGTTTCCTGAATCAGAATTTTTGCTGGAGTTAGGAAAACTGGAAGAAAAAATGAATGTTCAGTATGCCCCCTC
TCAAAAAGAAGCCATTCAGCGGGCTATTCATTCGCCGATTCTTTTGCTGACCGGCGGGCCTGGAACGGGAAAAACAACCG
TTATCAAAGGCATCGTTGAAATTTATGCGAACCTCCACGGCCTTTCATTGAACCCAAAAGAATATCAAAAGAAGGAAGAG
CCGTTTCCCATTGTACTGGTGGCACCTACCGGACGAGCTGCAAAAAGAATGGCAGAAGCAACCGGTCTTCCTGCCGTCAC
AATCCACCGCCTTTTAGGATGGAATGGTTCAGAAGGATTTGAACACAATGAGGATCATCCGATTTCTGGAAAGCTTCTGA
TTGTTGATGAAGTATCAATGGTTGATATTTGGCTCATGCATCAATTGTTTAAATCGCTTCCTTCGGACATACAAATTGTT
CTTGTCGGAGACGAACACCAGCTTCCGTCCGTTGGACCCGGCCAAGTGCTTCGCGATTTGATTCAATCCGGACGAATCCC
AGTTGTTACGCTGACAGATATTTATAGACAAGCAGAAGGATCTACAATTATTGATTTGGCCCATTCAATCCGCCAAGGAA
CTCTTCCAGCGAACCTTTTGCAAACGACACAAGACAGATCGTTTATTCCTTGTACAACATCACAAATAAAAGAAGTTATA
ACGAGAGTAATTGAGAACGCTTTGAAAAAAGGATATTCTGCGAAGGATATACAGGTGTTGGCACCGATGTACAGAGGGAT
TGCCGGCATTGATCAGTTGAATGAAATGCTTCAGGAAATGTTAAACCCCCCTTCAAAAGAAAAAAGAGAGATCAAGCATG
GTAACGTTATTTACCGAATCGGGGACAAAGTGCTGCAGCTCGTCAATCAGCCTGATCAAAACGTGTTTAATGGCGATATT
GGGGAGATTGTTTCTATTTTTTACGCAAAAGAAAATGTCGAAAAAGAAGATATGGTGGTCATTTCTTACGACGGTATCGA
AGTAACCTATACGAAGCAAGATTTTAATCAGTTTACTCATGCTTACTGCTGCTCCATCCATAAAGCGCAGGGAAGCGAAT
TTCCGATTGTCATTTTGCCGGTAGTAAAAGGCTACTTTCGGATGTTGAGAAGAAATTTGATTTATACAGCGGTTACAAGG
AGCAAGCAATTTTTAATTATGTGCGGAGAATGGGAAGCGTTAAAAATGGGAGTATACAACAATCAGGAGTCGATGAGGCA
GACAACCTTAAAAGAGAGGCTGAAAACGTCTGAACTTGCCGAGCTGAAAGAGGAGCTTCCTTTTCCACTAGAAGATGCCA
ACATTGGGATGGAGAACATCACTCCATATGATTTTATGGAAGAGGGCGAAGGATAA

Domains

Predicted by InterproScan.

UvrD-like helicase C-terminal domain (UvrD_C_2)

(680-728)

Helix-hairpin-helix containing domain (HHH_RecD2)

(158-249)

AAA domain (AAA_30)

(344-553)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(593-659)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

63.613

99.368

0.632

Multiple sequence alignment