Detailed information
Bioinformatically predicted
Overview
| Name | rarA | Type | Machinery gene |
| Locus tag | ACI6TB_RS04075 | Genome accession | NZ_CP174270 |
| Coordinates | 872826..874166 (-) | Length | 446 a.a. |
| NCBI ID | WP_075293827.1 | Uniprot ID | A0A9Q7E403 |
| Organism | Histophilus somni strain HSNMG-1 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Genomic Context
Location: 867826..879166
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ACI6TB_RS04050 (ACI6TB_04050) | - | 867833..868558 (-) | 726 | WP_011608961.1 | class I SAM-dependent methyltransferase | - |
| ACI6TB_RS04055 (ACI6TB_04055) | gloB | 868592..869293 (+) | 702 | WP_075293824.1 | hydroxyacylglutathione hydrolase | - |
| ACI6TB_RS04060 (ACI6TB_04060) | hemA | 869404..870705 (+) | 1302 | WP_075293825.1 | glutamyl-tRNA reductase | - |
| ACI6TB_RS04065 (ACI6TB_04065) | - | 870717..872111 (-) | 1395 | WP_075293826.1 | MATE family efflux transporter | - |
| ACI6TB_RS04070 (ACI6TB_04070) | - | 872165..872773 (+) | 609 | WP_011608965.1 | riboflavin synthase | - |
| ACI6TB_RS04075 (ACI6TB_04075) | rarA | 872826..874166 (-) | 1341 | WP_075293827.1 | replication-associated recombination protein A | Machinery gene |
| ACI6TB_RS04080 (ACI6TB_04080) | lolA | 874232..874846 (-) | 615 | WP_011608967.1 | outer membrane lipoprotein chaperone LolA | - |
| ACI6TB_RS04085 (ACI6TB_04085) | - | 875068..875481 (+) | 414 | WP_012340443.1 | YhcB family protein | - |
| ACI6TB_RS04090 (ACI6TB_04090) | - | 875610..876998 (+) | 1389 | WP_011608969.1 | Do family serine endopeptidase | - |
| ACI6TB_RS04095 (ACI6TB_04095) | - | 877083..877559 (-) | 477 | WP_041604159.1 | low molecular weight protein-tyrosine-phosphatase | - |
| ACI6TB_RS04100 (ACI6TB_04100) | - | 877692..878414 (+) | 723 | WP_011608971.1 | phosphotransferase | - |
Sequence
Protein
Download Length: 446 a.a. Molecular weight: 49875.08 Da Isoelectric Point: 7.1419
>NTDB_id=964767 ACI6TB_RS04075 WP_075293827.1 872826..874166(-) (rarA) [Histophilus somni strain HSNMG-1]
MSSFSLDFSLGTFQPLAAKMRPQTLKQYCGQEHLIGAGKPLYKAIENGHIHSMIFWGPPGTGKTTLAEIIAQQIHAQVER
ISAVTAGVKEIRESVERAKQNRLMGQQTILFVDEVHRFNKSQQDAFLPHIENGTIIFIGATTENPSFELNNALLSRVKVY
ILKPLTTSNIVTVLQNAIQDAEQGLGKERLIFAENVLETLAEYVNGDARLALNCLELMVDMADETEKGKLINHHLLTEVL
GERQARFDKQGDRFYDLISALHKSIRGSAPDAALYWYARIITAGGDPLYVARRLLAIASEDVGNADPRAMQVALAAWDCF
TRVGAAEGERAIAQAIVYLAVAPKSNAVYVAFKQAKKLAKEMPDYDVPVHLRNAPTHLMKELGYGAEYRYAHDEPNAYAA
GEIYFPEELKNTKFYFPTDRGLEIQLKEKLARLHNLDEQSTKKRYK
MSSFSLDFSLGTFQPLAAKMRPQTLKQYCGQEHLIGAGKPLYKAIENGHIHSMIFWGPPGTGKTTLAEIIAQQIHAQVER
ISAVTAGVKEIRESVERAKQNRLMGQQTILFVDEVHRFNKSQQDAFLPHIENGTIIFIGATTENPSFELNNALLSRVKVY
ILKPLTTSNIVTVLQNAIQDAEQGLGKERLIFAENVLETLAEYVNGDARLALNCLELMVDMADETEKGKLINHHLLTEVL
GERQARFDKQGDRFYDLISALHKSIRGSAPDAALYWYARIITAGGDPLYVARRLLAIASEDVGNADPRAMQVALAAWDCF
TRVGAAEGERAIAQAIVYLAVAPKSNAVYVAFKQAKKLAKEMPDYDVPVHLRNAPTHLMKELGYGAEYRYAHDEPNAYAA
GEIYFPEELKNTKFYFPTDRGLEIQLKEKLARLHNLDEQSTKKRYK
Nucleotide
Download Length: 1341 bp
>NTDB_id=964767 ACI6TB_RS04075 WP_075293827.1 872826..874166(-) (rarA) [Histophilus somni strain HSNMG-1]
ATGTCCAGCTTTTCACTTGATTTCTCTCTCGGTACATTTCAACCGTTAGCCGCAAAAATGAGACCGCAAACACTGAAGCA
ATATTGTGGCCAAGAACATTTAATCGGAGCTGGAAAGCCACTATATAAAGCCATTGAAAACGGACATATTCATTCTATGA
TTTTTTGGGGCCCGCCTGGTACAGGAAAAACAACGCTGGCAGAGATTATTGCACAACAAATTCATGCTCAAGTTGAGCGT
ATTTCTGCAGTTACCGCCGGAGTGAAAGAGATTCGGGAAAGTGTTGAACGGGCAAAACAAAATCGTTTAATGGGTCAACA
AACTATTTTATTTGTTGATGAAGTTCACCGTTTTAATAAAAGCCAACAAGATGCTTTTTTGCCCCATATTGAAAATGGCA
CTATCATTTTTATAGGTGCAACCACAGAAAATCCATCATTTGAATTAAATAATGCGTTACTCTCTCGTGTCAAAGTTTAT
ATTTTGAAACCTTTAACTACATCTAATATTGTGACAGTGTTACAAAATGCTATCCAAGATGCAGAGCAAGGATTGGGAAA
AGAGCGGTTGATTTTCGCTGAAAATGTTCTTGAAACCTTAGCTGAATATGTCAATGGGGATGCCCGTTTAGCACTAAATT
GTTTAGAACTCATGGTGGATATGGCAGATGAAACAGAAAAAGGGAAATTGATTAATCATCATCTCCTAACCGAAGTATTA
GGGGAACGACAGGCTCGCTTCGACAAGCAAGGGGATCGCTTTTATGATCTAATTTCCGCTCTACATAAATCTATTCGTGG
CTCCGCTCCCGATGCTGCTTTATATTGGTATGCTAGAATTATTACTGCCGGAGGTGATCCTCTCTATGTTGCAAGGCGTT
TATTAGCTATTGCCTCCGAAGACGTAGGGAATGCCGATCCGAGAGCAATGCAAGTAGCACTTGCAGCATGGGATTGTTTT
ACTCGAGTTGGTGCAGCTGAAGGAGAACGTGCTATCGCACAAGCGATTGTATATTTAGCTGTTGCACCAAAAAGTAACGC
TGTATATGTTGCCTTTAAACAAGCAAAAAAACTCGCAAAAGAAATGCCGGATTATGATGTACCGGTACATTTACGTAATG
CACCAACTCATTTAATGAAAGAGTTGGGATATGGAGCAGAATATCGTTATGCTCATGATGAACCTAATGCCTATGCAGCA
GGAGAAATTTATTTTCCAGAAGAATTAAAAAATACGAAATTTTATTTTCCTACAGATCGTGGACTGGAAATTCAACTTAA
AGAAAAATTAGCACGATTGCATAATTTAGATGAGCAAAGCACAAAAAAACGCTATAAATAG
ATGTCCAGCTTTTCACTTGATTTCTCTCTCGGTACATTTCAACCGTTAGCCGCAAAAATGAGACCGCAAACACTGAAGCA
ATATTGTGGCCAAGAACATTTAATCGGAGCTGGAAAGCCACTATATAAAGCCATTGAAAACGGACATATTCATTCTATGA
TTTTTTGGGGCCCGCCTGGTACAGGAAAAACAACGCTGGCAGAGATTATTGCACAACAAATTCATGCTCAAGTTGAGCGT
ATTTCTGCAGTTACCGCCGGAGTGAAAGAGATTCGGGAAAGTGTTGAACGGGCAAAACAAAATCGTTTAATGGGTCAACA
AACTATTTTATTTGTTGATGAAGTTCACCGTTTTAATAAAAGCCAACAAGATGCTTTTTTGCCCCATATTGAAAATGGCA
CTATCATTTTTATAGGTGCAACCACAGAAAATCCATCATTTGAATTAAATAATGCGTTACTCTCTCGTGTCAAAGTTTAT
ATTTTGAAACCTTTAACTACATCTAATATTGTGACAGTGTTACAAAATGCTATCCAAGATGCAGAGCAAGGATTGGGAAA
AGAGCGGTTGATTTTCGCTGAAAATGTTCTTGAAACCTTAGCTGAATATGTCAATGGGGATGCCCGTTTAGCACTAAATT
GTTTAGAACTCATGGTGGATATGGCAGATGAAACAGAAAAAGGGAAATTGATTAATCATCATCTCCTAACCGAAGTATTA
GGGGAACGACAGGCTCGCTTCGACAAGCAAGGGGATCGCTTTTATGATCTAATTTCCGCTCTACATAAATCTATTCGTGG
CTCCGCTCCCGATGCTGCTTTATATTGGTATGCTAGAATTATTACTGCCGGAGGTGATCCTCTCTATGTTGCAAGGCGTT
TATTAGCTATTGCCTCCGAAGACGTAGGGAATGCCGATCCGAGAGCAATGCAAGTAGCACTTGCAGCATGGGATTGTTTT
ACTCGAGTTGGTGCAGCTGAAGGAGAACGTGCTATCGCACAAGCGATTGTATATTTAGCTGTTGCACCAAAAAGTAACGC
TGTATATGTTGCCTTTAAACAAGCAAAAAAACTCGCAAAAGAAATGCCGGATTATGATGTACCGGTACATTTACGTAATG
CACCAACTCATTTAATGAAAGAGTTGGGATATGGAGCAGAATATCGTTATGCTCATGATGAACCTAATGCCTATGCAGCA
GGAGAAATTTATTTTCCAGAAGAATTAAAAAATACGAAATTTTATTTTCCTACAGATCGTGGACTGGAAATTCAACTTAA
AGAAAAATTAGCACGATTGCATAATTTAGATGAGCAAAGCACAAAAAAACGCTATAAATAG
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| rarA | Bacillus subtilis subsp. subtilis str. 168 |
39.007 |
94.843 |
0.37 |