Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   NST31_RS19680 Genome accession   NZ_CP150169
Coordinates   4200478..4202874 (+) Length   798 a.a.
NCBI ID   WP_077110562.1    Uniprot ID   -
Organism   Siminovitchia sp. FSL W7-1587     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4195478..4207874
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NST31_RS19655 (NST31_19655) - 4196327..4196995 (+) 669 WP_077110552.1 hypothetical protein -
  NST31_RS19660 (NST31_19660) - 4196992..4197411 (+) 420 WP_077110554.1 Rrf2 family transcriptional regulator -
  NST31_RS19665 (NST31_19665) - 4197433..4198581 (+) 1149 WP_077110556.1 cysteine desulfurase family protein -
  NST31_RS19670 (NST31_19670) mnmA 4198596..4199711 (+) 1116 WP_077110558.1 tRNA 2-thiouridine(34) synthase MnmA -
  NST31_RS19675 (NST31_19675) - 4199786..4200448 (+) 663 WP_077110560.1 tetratricopeptide repeat protein -
  NST31_RS19680 (NST31_19680) recD2 4200478..4202874 (+) 2397 WP_077110562.1 ATP-dependent RecD-like DNA helicase Machinery gene
  NST31_RS19685 (NST31_19685) - 4202914..4203444 (+) 531 WP_339162784.1 PRC-barrel domain-containing protein -
  NST31_RS19690 (NST31_19690) - 4203404..4203592 (+) 189 WP_339162787.1 hypothetical protein -
  NST31_RS19695 (NST31_19695) - 4204049..4205119 (+) 1071 WP_077110568.1 AI-2E family transporter -

Sequence

Protein


Download         Length: 798 a.a.        Molecular weight: 89967.05 Da        Isoelectric Point: 4.8915

>NTDB_id=964683 NST31_RS19680 WP_077110562.1 4200478..4202874(+) (recD2) [Siminovitchia sp. FSL W7-1587]
MNQQNSLDLRTDEEHFIKGRHLVTIFHNEANFYSVIRIRVEETNVAYEEKEAVVTGYFPKIHEQETYLFYGNLKEHPKFG
LQFHAKHFKKEIPQTKQGLVAYLSSDLFKGIGKKTAERIVETLGENAISRILAEPSVLETIPRLASDTAKDLYDALLEHQ
ELEQIMIGLNQHGFGPQLSMKIYQAYKENALDIIETNPYQLIADVEGIGFGRADELGMQIGIDGVHPDRIKAACLYALEQ
DCLQNGHVYLEAEELLIKVKKLLEDSQPVEIPYDMISQCFIQLEEEGKIIGEEKRVYIPSLYFSERGIITNIERLLEQNQ
YAEQFPESEFLMALGKLEDRLGIQYAPSQKEAIQTALTSPLMILTGGPGTGKTTVIKGIVELYAELHGCSLDIHAYKDQP
FPFVLAAPTGRAAKRMAESTGLPAVTIHRLLGMTGQENMDADGDREIEGKIVIIDEMSMVDTWLAHQLFKALPEDIQVIL
VGDEDQLPSVGPGQVLTDLLKSNIIPTVELTDIYRQADGSSIIELAHTIKKGNIPEKITEPQADRSFIKCQGTQISEVVE
KVVRSAVRKGYAAKDIQVLAPMYRGPAGIDHLNKILQNVLNPKGSGNKRKEVTFGDVSYRIGDKVLQLVNQPEKNVFNGD
IGEIISILYARENVEKQDMMIVSFEGTEVTYYRQDFNQITHAFCCSIHKSQGSEFPIVILPVVKSYYRMLRRNLLYTAIT
RSKEFLILCGEEEAFRMGISRVDDQKRQTTLYEKLAASASLPVDKDKTIEQADLSFEEKLFMVDPMIGMENVTPYDFL

Nucleotide


Download         Length: 2397 bp        

>NTDB_id=964683 NST31_RS19680 WP_077110562.1 4200478..4202874(+) (recD2) [Siminovitchia sp. FSL W7-1587]
ATGAACCAACAGAATTCTCTCGATTTAAGGACGGATGAAGAACATTTTATAAAGGGGCGCCATTTAGTCACTATTTTCCA
TAATGAGGCGAACTTTTATTCCGTTATCAGAATTCGGGTGGAAGAAACAAACGTCGCATATGAAGAAAAAGAAGCCGTTG
TGACGGGTTATTTCCCTAAAATTCATGAACAGGAGACATATCTTTTTTACGGTAACCTAAAAGAACACCCTAAATTTGGT
CTTCAGTTTCATGCAAAGCATTTTAAAAAGGAAATTCCGCAAACAAAGCAAGGACTTGTTGCCTATCTTTCAAGCGACCT
TTTTAAAGGGATCGGTAAAAAAACGGCCGAACGTATCGTTGAAACACTTGGCGAAAACGCAATTAGCCGCATTTTGGCAG
AACCGTCCGTACTGGAAACCATCCCGAGATTGGCTTCTGATACGGCTAAAGATTTGTACGACGCTCTCCTGGAACATCAA
GAATTGGAACAAATTATGATCGGGCTCAATCAACATGGTTTTGGACCACAGTTGTCCATGAAAATTTACCAAGCATATAA
AGAAAATGCACTGGACATTATTGAGACAAATCCGTATCAATTGATTGCAGATGTGGAGGGGATCGGGTTTGGCCGGGCGG
ATGAACTCGGGATGCAAATAGGCATTGATGGAGTCCACCCCGACCGGATTAAGGCCGCGTGTCTTTATGCGTTAGAGCAA
GATTGTCTGCAAAACGGCCATGTTTATTTAGAGGCGGAAGAGCTTCTGATAAAGGTTAAGAAGCTATTGGAAGACAGCCA
ACCCGTGGAAATTCCATATGACATGATTAGCCAGTGCTTCATACAGCTTGAAGAAGAAGGGAAAATCATTGGTGAAGAAA
AGCGGGTATATATTCCTTCCCTTTATTTTTCCGAAAGAGGGATCATAACAAATATCGAACGCTTGCTTGAGCAAAATCAG
TATGCGGAACAATTTCCGGAGTCGGAATTTTTAATGGCGTTGGGCAAGTTGGAGGACAGACTGGGCATCCAGTATGCGCC
ATCTCAAAAAGAGGCTATTCAAACGGCGCTGACAAGTCCGCTTATGATATTAACCGGGGGACCTGGTACGGGAAAAACAA
CGGTCATAAAAGGGATTGTGGAATTATATGCCGAGCTTCATGGGTGTTCGCTTGATATACACGCTTATAAAGACCAACCC
TTTCCGTTCGTATTAGCCGCCCCGACAGGACGAGCCGCCAAAAGAATGGCAGAATCAACCGGGCTTCCTGCCGTAACAAT
TCACCGTCTTCTCGGTATGACTGGGCAGGAAAATATGGATGCTGACGGGGATCGGGAAATAGAAGGAAAAATCGTCATCA
TTGATGAAATGTCCATGGTCGACACATGGCTTGCCCATCAACTTTTTAAAGCACTTCCGGAAGATATTCAAGTCATCCTT
GTGGGAGATGAGGATCAGCTTCCGTCCGTCGGGCCGGGACAAGTTCTTACGGACTTATTGAAGTCTAACATCATTCCGAC
AGTGGAGCTTACTGACATTTATCGGCAAGCCGACGGCTCCTCGATTATTGAACTGGCCCATACGATCAAAAAGGGAAACA
TTCCGGAGAAGATCACTGAACCGCAGGCAGACCGTTCTTTTATCAAATGCCAAGGAACTCAAATTAGTGAGGTTGTCGAA
AAAGTTGTTCGGAGCGCAGTCAGAAAAGGTTATGCGGCCAAAGATATTCAAGTGCTCGCACCAATGTACCGCGGACCTGC
TGGGATTGACCATTTGAACAAAATTTTGCAAAATGTCCTTAATCCGAAAGGAAGCGGCAATAAACGAAAAGAAGTCACAT
TTGGGGATGTTTCATACCGGATTGGCGACAAGGTGCTTCAACTTGTTAATCAACCGGAGAAAAATGTGTTCAACGGAGAT
ATCGGGGAAATTATTTCGATTTTATACGCAAGAGAAAACGTAGAGAAGCAGGATATGATGATCGTTTCTTTTGAAGGAAC
AGAAGTCACGTATTATCGCCAGGACTTTAATCAAATCACCCATGCTTTTTGCTGTTCCATCCATAAATCGCAAGGAAGCG
AATTTCCCATTGTCATCCTTCCTGTCGTCAAAAGTTATTATCGCATGCTGCGAAGGAATTTATTATATACAGCGATTACC
CGAAGCAAAGAATTTCTGATTTTGTGCGGAGAGGAAGAAGCTTTTCGCATGGGCATTTCGAGGGTGGATGATCAGAAGAG
ACAAACGACTTTGTATGAAAAATTGGCGGCTTCCGCCAGCTTGCCGGTGGATAAAGATAAAACAATAGAACAAGCGGACT
TGTCTTTTGAAGAGAAGCTTTTTATGGTTGATCCCATGATCGGCATGGAAAATGTTACGCCTTATGATTTTCTTTAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix containing domain (HHH_RecD2)

(158-249)

AAA domain (AAA_30)

(345-551)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(592-664)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(681-729)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

61.327

100

0.614

Multiple sequence alignment