Detailed information    

insolico Bioinformatically predicted

Overview

Name   recJ   Type   Machinery gene
Locus tag   NYE66_RS12160 Genome accession   NZ_CP150167
Coordinates   2301196..2303562 (-) Length   788 a.a.
NCBI ID   WP_061580811.1    Uniprot ID   A0A3L7D7T6
Organism   Geobacillus sp. FSL W8-0466     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2296196..2308562
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NYE66_RS12135 (NYE66_12135) ahpC 2296816..2297379 (-) 564 WP_033014786.1 alkyl hydroperoxide reductase subunit C -
  NYE66_RS12140 (NYE66_12140) - 2297610..2297783 (-) 174 WP_015375481.1 hypothetical protein -
  NYE66_RS12145 (NYE66_12145) dtd 2297864..2298322 (-) 459 WP_013144643.1 D-aminoacyl-tRNA deacylase -
  NYE66_RS12150 (NYE66_12150) - 2298346..2300544 (-) 2199 WP_049626409.1 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase -
  NYE66_RS12155 (NYE66_12155) - 2300693..2301205 (-) 513 WP_033014788.1 adenine phosphoribosyltransferase -
  NYE66_RS12160 (NYE66_12160) recJ 2301196..2303562 (-) 2367 WP_061580811.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  NYE66_RS12165 (NYE66_12165) - 2303620..2304528 (-) 909 WP_121649944.1 cation diffusion facilitator family transporter -
  NYE66_RS12170 (NYE66_12170) secDF 2304666..2306918 (-) 2253 WP_121649945.1 protein translocase subunit SecDF -
  NYE66_RS12175 (NYE66_12175) - 2307031..2307318 (-) 288 WP_033014790.1 post-transcriptional regulator -

Sequence

Protein


Download         Length: 788 a.a.        Molecular weight: 86658.22 Da        Isoelectric Point: 5.8585

>NTDB_id=964560 NYE66_RS12160 WP_061580811.1 2301196..2303562(-) (recJ) [Geobacillus sp. FSL W8-0466]
MLKAKTRWEVERLDEQTVRRLAEEAGVTPLLARLLVRRGVRTASEAASFLNPLEQSFHDPFLLDGMERAIQRLKRAIDAG
ERVLVYGDYDADGVCSTSVMVSALKEAGASVEFYIPNRFTEGYGPNMAAFRSAKERGVSVIVTVDNGIAAVKEIAAANEW
GMDVIVTDHHEPGPVLPEAHAIIHPKQPGSTYPFRDLAGVGVAFKVAHALLGRVPRHLLDLVAIGTIADLVPLVGENRLF
VAHGLEALRATERIGLRALFRQCRIDAAAINEQTVGFVIAPRLNAAGRLGGADPAVALLMTDDENEAVQLAAEMDELNRE
RQQLVTQIAEEAADMVRRQFPPEEHRVLVVAGEGWNAGVVGIVASKLVEQFYRPAVVLSIDREKGIAKGSARSIHGFDLF
ASLSQCRDLLPHFGGHPMAAGMTLALDDVEELRQRLNAIAAETLSDDDLTPLTFIDASCSVAELTLDAARGLERLAPFGV
GNPRPLVLIEGASVETMRRVGANGAHMKAVFAQEGASVDAIGFGLGPLCEEIAPGARVSAVGELSVNEWNGLAKAQLSLC
DLAVSHCQLFDIRGCRDVRPFLERLPKEKRLLVMFRQGTGARPDLASFRGELRCVLTDEEAGALEISGRYVVLLDLPPTL
GRLAALLGGKEPARIYALFAQPEARFFRTFPTRDHFKWFYALLHKYRSFPLAERGGQLARARGWTEETVHFMAKVFLELE
FITEQNGVISLVRAPAKRDLHESPTYRRWRDELEVEQQLLYSTYEQLNRCLAEMTRSQTHEEANVSWT

Nucleotide


Download         Length: 2367 bp        

>NTDB_id=964560 NYE66_RS12160 WP_061580811.1 2301196..2303562(-) (recJ) [Geobacillus sp. FSL W8-0466]
ATGTTGAAAGCGAAAACGCGTTGGGAGGTGGAGCGCCTCGATGAGCAGACGGTGAGGCGGCTGGCTGAGGAAGCCGGCGT
CACGCCCTTATTGGCGAGGCTTCTCGTCCGCCGCGGGGTGCGGACGGCCTCGGAGGCGGCGTCGTTTCTCAATCCGCTTG
AGCAATCGTTTCATGATCCGTTTTTGCTTGACGGGATGGAGCGCGCGATTCAGCGTCTAAAGCGGGCGATCGACGCGGGT
GAACGCGTGTTGGTATACGGCGATTACGATGCCGATGGCGTTTGCAGCACGTCGGTGATGGTGAGTGCTCTCAAGGAGGC
GGGGGCGTCGGTCGAGTTCTACATTCCGAACCGATTTACGGAAGGATACGGGCCGAACATGGCGGCGTTTCGCTCCGCAA
AAGAGCGCGGCGTTTCCGTCATTGTGACCGTCGACAATGGGATTGCGGCGGTCAAGGAAATTGCGGCCGCCAACGAGTGG
GGGATGGATGTCATCGTAACGGATCACCACGAGCCAGGTCCGGTGTTGCCGGAGGCGCATGCGATCATCCATCCGAAGCA
GCCGGGAAGTACATATCCGTTTCGCGATTTAGCCGGCGTCGGCGTTGCGTTTAAGGTAGCCCATGCCTTGCTTGGGCGGG
TGCCGCGCCATTTGCTTGATTTGGTCGCGATCGGCACGATCGCTGATTTGGTTCCGCTTGTTGGGGAAAACCGCCTCTTT
GTTGCACACGGGCTTGAAGCGTTGCGAGCGACGGAGCGCATCGGGCTGCGCGCTCTTTTTCGGCAATGCCGCATTGATGC
GGCGGCCATCAACGAACAGACGGTCGGATTTGTCATCGCTCCGCGCTTGAACGCGGCGGGGCGCCTCGGCGGCGCCGATC
CGGCAGTGGCGCTCTTAATGACGGACGATGAGAACGAAGCGGTGCAGCTGGCGGCGGAGATGGACGAGTTAAACCGCGAA
CGTCAGCAGCTTGTGACACAAATCGCTGAAGAAGCGGCGGACATGGTGCGCCGCCAATTTCCTCCTGAGGAACATCGCGT
CTTGGTTGTGGCAGGCGAAGGATGGAATGCCGGAGTGGTGGGCATTGTCGCTTCTAAGCTTGTTGAGCAGTTTTACCGCC
CGGCGGTCGTGCTTTCAATCGACCGGGAAAAAGGGATCGCCAAAGGGTCAGCCCGTAGCATTCATGGGTTTGACTTATTC
GCCAGCCTGTCGCAATGCCGCGACCTGTTGCCGCACTTTGGCGGCCACCCGATGGCGGCGGGGATGACATTGGCGCTTGA
TGATGTCGAAGAATTGCGGCAACGGCTGAACGCCATCGCCGCGGAAACGCTGTCCGATGACGACTTGACGCCGCTGACGT
TTATTGACGCCTCTTGTTCGGTCGCTGAGCTGACGCTCGACGCCGCCCGCGGGCTCGAACGGCTCGCTCCGTTTGGCGTC
GGCAATCCGCGGCCGCTTGTTCTCATTGAAGGGGCGTCCGTTGAAACGATGCGGCGCGTCGGAGCGAACGGCGCCCATAT
GAAGGCGGTGTTTGCGCAGGAGGGCGCCTCAGTCGACGCCATTGGTTTTGGCCTCGGACCGCTGTGTGAGGAAATCGCCC
CGGGGGCGCGCGTTTCGGCAGTCGGGGAGCTTTCCGTGAATGAATGGAACGGGCTGGCGAAGGCGCAGCTGTCGCTGTGT
GATCTGGCGGTCAGCCACTGCCAGCTGTTTGACATCCGCGGCTGCCGCGACGTCCGTCCCTTTCTTGAGCGGTTGCCAAA
AGAAAAGCGGCTGCTTGTCATGTTTCGCCAAGGAACGGGCGCGCGCCCTGATTTAGCCTCGTTTCGCGGGGAACTTCGCT
GCGTGCTGACGGACGAAGAGGCGGGTGCGCTGGAGATTAGCGGCCGTTACGTTGTGCTGCTTGATTTGCCGCCGACGCTC
GGGCGGCTTGCCGCCTTGCTTGGGGGCAAGGAGCCGGCGCGCATTTATGCGCTGTTCGCCCAGCCGGAAGCCCGATTTTT
CCGTACGTTCCCGACGCGCGATCATTTTAAATGGTTTTATGCGCTGTTGCACAAATACCGTTCGTTCCCGCTTGCCGAGC
GGGGCGGGCAATTGGCGCGCGCCCGCGGTTGGACGGAAGAGACCGTTCATTTTATGGCGAAAGTGTTTTTGGAGTTGGAG
TTTATTACGGAGCAAAACGGCGTCATTTCGCTCGTCCGCGCGCCGGCGAAGCGCGATTTGCACGAATCGCCGACGTACCG
CCGCTGGCGGGACGAGCTTGAGGTGGAGCAACAGTTATTATATTCTACTTATGAGCAGCTTAACCGCTGTTTGGCGGAAA
TGACACGTTCGCAAACGCACGAGGAGGCAAACGTATCATGGACTTAA

Domains

Predicted by InterproScan.

DHHA1 domain (DHHA1)

(315-439)

Single-strand DNA-specific exonuclease, C terminal domain (ssDNA-exonuc_C)

(568-770)

DHH family (DHH)

(82-226)

RecJ OB domain (RecJ_OB)

(455-560)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3L7D7T6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recJ Bacillus subtilis subsp. subtilis str. 168

52.888

98.858

0.523

Multiple sequence alignment