Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   NSQ43_RS12575 Genome accession   NZ_CP150166
Coordinates   2416678..2419119 (-) Length   813 a.a.
NCBI ID   WP_339250703.1    Uniprot ID   -
Organism   Sporosarcina sp. FSL W8-0480     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2411678..2424119
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NSQ43_RS12555 (NSQ43_12555) - 2412489..2412785 (-) 297 WP_339250696.1 DUF1292 domain-containing protein -
  NSQ43_RS12560 (NSQ43_12560) ruvX 2412796..2413215 (-) 420 WP_339250698.1 Holliday junction resolvase RuvX -
  NSQ43_RS12565 (NSQ43_12565) - 2413212..2413484 (-) 273 WP_283732267.1 IreB family regulatory phosphoprotein -
  NSQ43_RS12570 (NSQ43_12570) alaS 2413566..2416199 (-) 2634 WP_339250701.1 alanine--tRNA ligase -
  NSQ43_RS12575 (NSQ43_12575) recD2 2416678..2419119 (-) 2442 WP_339250703.1 ATP-dependent RecD-like DNA helicase Machinery gene
  NSQ43_RS12580 (NSQ43_12580) - 2419147..2419809 (-) 663 WP_339250705.1 tetratricopeptide repeat protein -
  NSQ43_RS12585 (NSQ43_12585) mnmA 2419821..2420945 (-) 1125 WP_339250706.1 tRNA 2-thiouridine(34) synthase MnmA -
  NSQ43_RS12590 (NSQ43_12590) - 2420967..2422103 (-) 1137 WP_339250707.1 cysteine desulfurase family protein -
  NSQ43_RS12595 (NSQ43_12595) - 2422130..2422549 (-) 420 WP_339250708.1 Rrf2 family transcriptional regulator -
  NSQ43_RS12600 (NSQ43_12600) - 2422681..2423961 (+) 1281 WP_339250709.1 replication-associated recombination protein A -

Sequence

Protein


Download         Length: 813 a.a.        Molecular weight: 91067.65 Da        Isoelectric Point: 5.0511

>NTDB_id=964522 NSQ43_RS12575 WP_339250703.1 2416678..2419119(-) (recD2) [Sporosarcina sp. FSL W8-0480]
MAGKTEAMFIVGRPVVTIFHNPDNLFSIVKLKITKTNSGYADREIVIKGNFPPLANEEDYRLTGVLVNHPTYGQQFDVHT
FSKEMPETETGIVHYLSSDLFPGIGRKTADTIVKILGMDAIQQILENPSVLDRIPKLSEERKETLVTVLQENLGLERSMV
QLNEWGFGPQLSMRIFQTYREEAIELLKENPFRLIEDVEGIGFQRADELGKQLGITGSHPSRVKAAILHSINQGVQSAGH
VYLEAEMILPEVKRLLESSQKEEVTFQQITQMIIELVEEGKLCGEGKRLYVPSLYFSEIGIASKMERIMENDHADKFPVS
EIRKAIGEAEERLGVSYAETQVAAIQEAIHSPAMILTGGPGTGKTTVIRGLVEVYAELHGLSLDPKVYAKKEESFPIVLA
APTGRAAKRMSESTGLPAMTIHRLLGFTGQEKDDAIGKEVEGRLIIIDEMSMVDTWLAHQLLKALQNDIQILFVGDQDQL
PPVGPGQVLKDMLHSGKIPVVELTEIYRQSAGSTIIEMAHMIKNGDWTDDITRKTGDRSFIKAYGDQILEVVEQVIKNAI
SKGHHIKNIQVLAPMYKGPAGIDGLNKMIQQMVNPPGPDRKEVVFGETVYRIGDKVLQLVNQPESNVFNGDMGEVISIIK
ASETVDKKEMLIVSYDGIEVEYERNDLNQITLAYCCSIHKSQGSEFPIVVMPVVRGYRKMLRKNLLYTGITRAKNFLILC
GEPEEFIIGINRTDELERQTTLKERLRKESILENENIIETNEQATHVETQDKPDFDVVVNKKEYRLTRETILGIDPMIGM
RGITPYDFSEAID

Nucleotide


Download         Length: 2442 bp        

>NTDB_id=964522 NSQ43_RS12575 WP_339250703.1 2416678..2419119(-) (recD2) [Sporosarcina sp. FSL W8-0480]
ATGGCGGGAAAGACAGAGGCGATGTTCATAGTTGGAAGACCAGTAGTTACAATCTTCCACAATCCCGATAATCTATTTTC
AATCGTCAAATTGAAAATAACGAAAACAAATAGCGGCTATGCGGATAGGGAAATCGTCATAAAAGGGAACTTTCCGCCCT
TAGCGAACGAAGAGGATTATCGATTAACCGGCGTACTTGTCAACCATCCGACCTATGGACAGCAATTCGATGTCCACACC
TTCTCCAAGGAAATGCCAGAAACTGAAACCGGAATCGTTCATTATCTATCAAGTGATTTATTCCCCGGAATAGGTAGAAA
AACAGCAGATACGATTGTAAAGATTTTAGGAATGGACGCAATCCAGCAAATTTTAGAAAACCCATCTGTGCTTGACCGCA
TTCCGAAGCTTTCAGAAGAGAGGAAAGAAACACTTGTAACAGTATTACAGGAAAATTTAGGTTTAGAGCGGTCAATGGTC
CAATTGAATGAATGGGGGTTCGGCCCCCAGCTATCCATGCGGATTTTCCAGACATACCGTGAGGAAGCAATTGAGCTATT
AAAAGAGAACCCTTTCCGGTTGATAGAAGACGTTGAAGGAATAGGATTTCAACGAGCGGATGAATTAGGTAAACAACTTG
GAATTACTGGTAGCCACCCTTCGCGAGTGAAGGCAGCGATTCTTCATTCAATTAACCAAGGGGTCCAGTCGGCTGGCCAT
GTCTATTTAGAGGCTGAAATGATTTTGCCAGAAGTGAAGCGCCTACTTGAAAGTAGCCAAAAGGAAGAAGTGACCTTTCA
GCAAATTACACAAATGATTATTGAATTGGTAGAAGAAGGGAAGCTTTGCGGGGAAGGTAAAAGGCTTTATGTCCCTTCTC
TTTATTTCTCGGAAATTGGCATCGCTTCGAAAATGGAACGGATAATGGAGAATGACCATGCCGATAAATTTCCAGTATCC
GAAATCCGCAAAGCAATTGGTGAAGCCGAAGAGCGTCTTGGCGTCAGCTATGCAGAAACCCAGGTCGCAGCCATTCAGGA
AGCTATTCATTCCCCAGCGATGATTCTAACCGGTGGGCCAGGTACTGGTAAAACAACTGTAATTCGGGGATTAGTTGAAG
TATATGCCGAATTGCATGGCCTTTCATTAGACCCTAAAGTCTATGCGAAAAAAGAAGAAAGCTTTCCGATTGTTTTGGCT
GCTCCGACTGGACGTGCGGCTAAAAGGATGTCCGAATCCACAGGTCTACCGGCAATGACCATCCATCGGCTTCTTGGTTT
TACCGGCCAGGAGAAGGATGACGCAATCGGGAAAGAAGTGGAAGGGCGTCTCATCATAATCGATGAGATGTCGATGGTCG
ATACATGGCTGGCGCATCAATTGCTGAAGGCATTACAAAACGACATCCAAATACTTTTCGTCGGAGACCAAGATCAGCTG
CCCCCTGTTGGACCGGGACAAGTCTTGAAAGATATGCTCCACTCCGGAAAAATCCCGGTTGTCGAACTGACCGAAATCTA
TCGTCAAAGTGCAGGATCTACAATCATTGAAATGGCACATATGATTAAAAACGGCGACTGGACAGATGACATCACTCGGA
AAACAGGAGATCGTTCATTCATCAAAGCGTATGGAGATCAAATCCTTGAAGTCGTTGAACAGGTCATCAAAAACGCAATC
TCAAAAGGGCACCATATTAAAAACATCCAAGTGCTTGCACCAATGTATAAAGGTCCTGCAGGTATAGATGGATTAAACAA
AATGATCCAGCAGATGGTCAATCCGCCGGGTCCCGACCGGAAAGAAGTTGTATTCGGGGAAACAGTTTACCGGATTGGGG
ACAAAGTGCTCCAACTAGTCAATCAACCCGAAAGCAATGTGTTCAATGGCGACATGGGCGAAGTCATCTCTATCATCAAA
GCCAGCGAAACAGTGGACAAAAAGGAAATGCTGATCGTTTCGTATGACGGGATTGAAGTGGAATATGAACGTAATGACCT
AAATCAAATAACACTCGCCTACTGCTGTTCAATCCATAAATCACAAGGCAGTGAATTTCCAATTGTCGTCATGCCCGTCG
TCCGAGGCTATCGAAAAATGCTCCGGAAAAATCTTCTCTACACAGGAATTACACGGGCTAAAAACTTTTTGATTCTATGC
GGTGAGCCAGAAGAATTCATAATCGGCATTAACCGGACAGACGAACTCGAGCGCCAGACGACCCTTAAGGAAAGGCTACG
CAAAGAATCTATCTTGGAAAATGAAAATATAATCGAAACAAACGAACAAGCAACACATGTCGAAACACAGGACAAACCTG
ATTTCGACGTTGTAGTAAACAAAAAAGAATACAGGTTAACAAGAGAAACAATTTTAGGTATTGACCCGATGATTGGTATG
AGGGGAATCACCCCATACGACTTTTCCGAGGCAATCGATTGA

Domains

Predicted by InterproScan.

AAA domain (AAA_30)

(337-543)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(585-645)

Helix-hairpin-helix containing domain (HHH_RecD2)

(154-242)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(673-720)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

52.035

99.754

0.519

Multiple sequence alignment