Detailed information    

insolico Bioinformatically predicted

Overview

Name   recJ   Type   Machinery gene
Locus tag   NSU02_RS14165 Genome accession   NZ_CP150165
Coordinates   2908363..2910741 (-) Length   792 a.a.
NCBI ID   WP_339193158.1    Uniprot ID   -
Organism   Aeribacillus sp. FSL W8-0870     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2903363..2915741
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NSU02_RS14145 (NSU02_14145) - 2903403..2904803 (+) 1401 Protein_2744 IS1182 family transposase -
  NSU02_RS14150 (NSU02_14150) dtd 2904966..2905406 (-) 441 WP_063387981.1 D-aminoacyl-tRNA deacylase -
  NSU02_RS14155 (NSU02_14155) - 2905422..2907605 (-) 2184 WP_063387980.1 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase -
  NSU02_RS14160 (NSU02_14160) - 2907830..2908342 (-) 513 WP_063387979.1 adenine phosphoribosyltransferase -
  NSU02_RS14165 (NSU02_14165) recJ 2908363..2910741 (-) 2379 WP_339193158.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  NSU02_RS14170 (NSU02_14170) - 2911267..2912487 (+) 1221 WP_063388609.1 IS110 family transposase -
  NSU02_RS14175 (NSU02_14175) secDF 2912897..2915119 (-) 2223 WP_339193160.1 protein translocase subunit SecDF -
  NSU02_RS14180 (NSU02_14180) - 2915165..2915458 (-) 294 WP_066249531.1 post-transcriptional regulator -

Sequence

Protein


Download         Length: 792 a.a.        Molecular weight: 90017.51 Da        Isoelectric Point: 5.5925

>NTDB_id=964478 NSU02_RS14165 WP_339193158.1 2908363..2910741(-) (recJ) [Aeribacillus sp. FSL W8-0870]
MLRSKFRWNRLYRDESNEEAVRALIDSLNITYLTARLLVNRGIQNVEEAKEFLHIKEPSFHDPFLLDGMERACERIFAAI
RAGEKIVVYGDYDADGVSSTAVLLTALKELGANVDFYIPNRFSEGYGPNEHAFRMIHEKGCRLIITVDTGIAAINEADLA
KRLGIDLIITDHHEPGPVLPDAYAIIHPKLPNSTYPFKELAGVGVAFKMVHALYGKVPESLIEIAAIGTIADLVPLYGEN
RLLAKKGIEKLKTTTRPGINSLLSIAGVDKSSVNEETIGFVLGPRINAAGRLQEADPAVELLLTDDKEKADMLAKEIDQL
NKQRQKLVQEITDEAIKEIEKNFPIEDNPVLVVAKENWNSGVIGIVASRLVEKFYRPAIVLSIDRETGLAKGSARSIQGF
DLFKNLSECRELLPHFGGHTMAAGMTLKAEHIDELRQKMIDLANSQLSDEDFIPVKNIECACSLEHVTIKAVEELEKLAP
FGVDNPKPLFLLENVNAADVRKIGVNGNHLKMKIEEKEFELDVVGFGQGELAEEISPFANVSIVGELAINEWNYVKKPQL
LLQDLAVPAWQLFDWRGSRGTEALLSKLPAEKRLLIAFHEESIKLYKDQPYIHEIHIISEIKDYKNIDVSNKYVVFLDMP
PAIEFLVSAFEQGMPERIYAIFYQHADHFFQTMPTREHFKWYYAFLTKKSSFDYKKYGEDLAKYRGWTKETIFFMTKVFF
ELEFVTINNGVITLNKKVKKRDLSESGTYQQKLDQMKLEQQLLYSSYQELKEWFEKAVLKRDADKFLQVHEW

Nucleotide


Download         Length: 2379 bp        

>NTDB_id=964478 NSU02_RS14165 WP_339193158.1 2908363..2910741(-) (recJ) [Aeribacillus sp. FSL W8-0870]
ATGCTGAGATCTAAATTTCGTTGGAATCGTTTATATAGGGATGAGTCCAACGAAGAGGCTGTTCGAGCATTAATCGACTC
TTTGAATATTACCTATTTGACTGCTCGATTACTTGTGAATCGCGGCATTCAAAATGTTGAAGAAGCAAAAGAGTTTTTAC
ATATAAAGGAACCTTCATTTCATGATCCTTTTTTGTTGGATGGGATGGAGCGGGCATGTGAGCGTATTTTTGCAGCAATC
CGCGCTGGTGAAAAGATTGTCGTATACGGTGATTATGATGCGGACGGCGTTTCCAGCACTGCCGTCCTGTTGACGGCATT
AAAGGAATTGGGGGCAAACGTCGATTTTTACATACCGAATCGATTTTCAGAAGGATACGGGCCAAACGAACATGCTTTCC
GAATGATTCATGAAAAAGGATGCAGGCTGATTATAACAGTTGATACCGGCATCGCGGCAATCAATGAAGCGGATTTAGCC
AAAAGGCTTGGAATCGACCTCATTATCACAGACCATCATGAACCGGGGCCTGTTTTGCCTGATGCGTATGCGATCATTCA
TCCGAAATTGCCAAATTCAACATATCCTTTTAAGGAGCTGGCAGGTGTAGGCGTTGCTTTTAAAATGGTCCATGCCCTTT
ATGGAAAGGTTCCAGAATCTCTGATAGAGATCGCAGCCATTGGAACAATTGCTGATTTAGTACCTCTATACGGAGAAAAT
CGGCTTCTTGCGAAAAAAGGGATTGAAAAATTAAAAACGACGACAAGACCTGGCATAAATTCGCTTCTTTCCATTGCTGG
AGTGGACAAATCTTCCGTAAATGAGGAAACGATAGGATTTGTTTTAGGACCGAGAATTAATGCGGCAGGGAGGCTGCAAG
AAGCCGATCCTGCCGTTGAATTGTTGTTGACAGATGATAAAGAAAAAGCTGATATGCTTGCTAAGGAAATCGATCAATTA
AATAAGCAAAGGCAGAAGCTTGTACAAGAGATAACGGACGAAGCGATTAAGGAAATTGAGAAAAATTTTCCAATCGAAGA
CAATCCTGTTTTAGTCGTCGCAAAAGAAAACTGGAATTCTGGAGTGATCGGAATCGTTGCTTCCAGATTGGTCGAAAAAT
TTTACCGTCCTGCCATCGTGTTGAGCATTGATCGTGAGACAGGTCTTGCCAAAGGGTCTGCGCGAAGCATTCAAGGGTTT
GATCTATTTAAAAACTTATCGGAATGCAGGGAGCTTCTCCCTCATTTTGGAGGCCATACGATGGCTGCTGGCATGACGCT
GAAAGCAGAGCATATTGACGAGCTGCGCCAAAAAATGATCGATCTTGCAAATAGTCAGCTTTCAGATGAAGATTTTATTC
CCGTAAAAAACATTGAATGTGCCTGTTCATTGGAGCATGTCACAATAAAAGCAGTCGAAGAGCTGGAGAAGCTTGCCCCT
TTCGGAGTCGATAATCCGAAGCCGCTCTTTTTACTAGAGAATGTCAATGCGGCAGATGTTAGAAAAATTGGGGTAAACGG
AAATCATTTGAAAATGAAGATTGAGGAGAAGGAATTTGAATTAGATGTCGTCGGCTTTGGACAGGGAGAATTGGCAGAAG
AAATATCTCCTTTCGCAAACGTTTCTATTGTCGGTGAGCTTGCGATCAACGAATGGAATTATGTAAAAAAGCCGCAGCTA
TTGCTTCAAGACCTTGCCGTGCCAGCGTGGCAGCTTTTTGATTGGCGAGGTTCAAGAGGAACGGAGGCTTTGCTCTCTAA
ACTTCCTGCTGAAAAACGATTGCTGATCGCCTTTCATGAAGAATCTATAAAATTATATAAAGATCAACCGTACATTCATG
AAATTCATATAATATCAGAAATAAAGGATTACAAAAATATAGATGTTTCCAATAAGTATGTTGTATTTCTCGATATGCCC
CCGGCAATCGAATTTCTTGTTTCAGCATTTGAGCAAGGAATGCCTGAAAGAATTTATGCTATTTTTTATCAGCACGCAGA
CCACTTTTTTCAAACAATGCCGACAAGAGAGCATTTTAAATGGTATTACGCATTCTTAACGAAAAAAAGTTCTTTCGATT
ACAAAAAATATGGGGAAGATTTAGCCAAATACCGTGGCTGGACAAAAGAAACGATCTTTTTTATGACAAAGGTGTTTTTT
GAACTTGAATTTGTTACAATAAACAATGGTGTGATTACATTAAACAAAAAGGTGAAAAAACGGGATTTATCAGAATCCGG
AACATATCAGCAGAAGCTGGATCAAATGAAACTGGAACAGCAGCTTCTCTATTCTTCTTATCAAGAACTGAAGGAATGGT
TTGAAAAGGCAGTCTTGAAACGAGATGCCGATAAATTTTTACAAGTTCATGAATGGTAA

Domains

Predicted by InterproScan.

DHHA1 domain (DHHA1)

(318-441)

DHH family (DHH)

(85-229)

Single-strand DNA-specific exonuclease, C terminal domain (ssDNA-exonuc_C)

(571-774)

RecJ OB domain (RecJ_OB)

(458-564)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recJ Bacillus subtilis subsp. subtilis str. 168

55.471

99.242

0.551

Multiple sequence alignment