Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   NSU02_RS14080 Genome accession   NZ_CP150165
Coordinates   2887843..2890218 (-) Length   791 a.a.
NCBI ID   WP_339193152.1    Uniprot ID   -
Organism   Aeribacillus sp. FSL W8-0870     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2882843..2895218
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NSU02_RS14060 (NSU02_14060) - 2883022..2883288 (-) 267 WP_063387994.1 IreB family regulatory phosphoprotein -
  NSU02_RS14065 (NSU02_14065) alaS 2883360..2885996 (-) 2637 WP_339193149.1 alanine--tRNA ligase -
  NSU02_RS14070 (NSU02_14070) - 2886325..2887386 (-) 1062 WP_063387992.1 AI-2E family transporter -
  NSU02_RS14075 (NSU02_14075) - 2887459..2887644 (-) 186 WP_063387991.1 hypothetical protein -
  NSU02_RS14080 (NSU02_14080) recD2 2887843..2890218 (-) 2376 WP_339193152.1 ATP-dependent RecD-like DNA helicase Machinery gene
  NSU02_RS14085 (NSU02_14085) - 2890240..2890893 (-) 654 WP_063388167.1 tetratricopeptide repeat protein -
  NSU02_RS14090 (NSU02_14090) mnmA 2890975..2892090 (-) 1116 WP_339193154.1 tRNA 2-thiouridine(34) synthase MnmA -
  NSU02_RS14095 (NSU02_14095) - 2892106..2893251 (-) 1146 WP_063387988.1 cysteine desulfurase family protein -
  NSU02_RS14100 (NSU02_14100) - 2893270..2893689 (-) 420 WP_063387987.1 Rrf2 family transcriptional regulator -
  NSU02_RS14105 (NSU02_14105) - 2893825..2895102 (+) 1278 WP_063387986.1 replication-associated recombination protein A -

Sequence

Protein


Download         Length: 791 a.a.        Molecular weight: 89403.62 Da        Isoelectric Point: 5.1240

>NTDB_id=964477 NSU02_RS14080 WP_339193152.1 2887843..2890218(-) (recD2) [Aeribacillus sp. FSL W8-0870]
MGGQQESLFHEESTPFVRGAIKHIVFQNEQNFYTVIKVKIEETNEQFEQDQVTVTGFFPLLQLHDSYTFFGAKKYHPKFG
VQFQAERFQKELPTTKEGVIQYLSSGLFKGIGKKTAEAIVNELGEHAISIILEDPDSLKRVKKLSKEKAKILAETLKEHQ
GLEGVLIGLNQLGIGPALGMKIYQLYREDTLKIIQKNPYQLVEDIEGIGFIRADEIGRELGISGNHPDRLKAACLFTIEQ
DAVKEGHVYVTKVQLMEKAKKLLTQNGEDISDQDIERIILELEEDRKIIVEEDRIYLPSLYYAEVGLANNIEEILTQNQF
QDMFPESEFLLELGKLEEKMNVQYAPSQKEAIQRAIHSPILLLTGGPGTGKTTVIKGIVEIYANLHGLSLNPKEYQKKEE
PFPIVLVAPTGRAAKRMAEATGLPAVTIHRLLGWNGSEGFEHNEDHPISGKLLIVDEVSMVDIWLMHQLFKSLPSDIQIV
LVGDEHQLPSVGPGQVLRDLIQSGRIPVVTLTDIYRQAEGSTIIDLAHSIRQGTLPANLLQTTQDRSFIPCTTSQIKEVI
TRVIENALKKGYSAKDIQVLAPMYRGIAGIDQLNEMLQEMLNPPSKEKREIKHGNVIYRIGDKVLQLVNQPDQNVFNGDI
GEIVSIFYAKENVEKEDMVVISYDGIEVTYTKQDFNQFTHAYCCSIHKAQGSEFPIVILPVVKGYFRMLRRNLIYTAVTR
SKQFLIMCGEWEALKMGVYNNQESMRQTTLKERLKTSELAELKEELPFPLEDANIGMENITPYDFMEEGEG

Nucleotide


Download         Length: 2376 bp        

>NTDB_id=964477 NSU02_RS14080 WP_339193152.1 2887843..2890218(-) (recD2) [Aeribacillus sp. FSL W8-0870]
ATGGGCGGTCAACAGGAGAGTTTGTTTCATGAGGAAAGTACTCCTTTTGTTCGCGGAGCCATTAAACATATTGTGTTCCA
GAATGAGCAAAATTTTTATACTGTTATTAAAGTGAAAATTGAAGAGACGAATGAACAGTTTGAGCAAGATCAAGTGACCG
TGACGGGTTTTTTTCCTCTTCTCCAATTACATGACAGCTATACGTTTTTTGGCGCGAAAAAATACCACCCAAAATTCGGC
GTACAATTTCAAGCTGAGCGTTTTCAAAAGGAGCTTCCAACTACGAAAGAAGGAGTTATTCAATATTTATCAAGCGGGCT
TTTTAAAGGAATCGGCAAAAAAACAGCGGAAGCGATCGTGAATGAACTGGGCGAACATGCGATTTCGATTATTTTGGAGG
ATCCCGATTCATTAAAAAGAGTGAAGAAGCTTTCAAAGGAAAAAGCCAAAATACTGGCTGAAACACTGAAGGAACATCAA
GGTTTAGAAGGGGTTTTAATCGGATTAAATCAGCTTGGCATTGGGCCTGCACTTGGGATGAAAATTTATCAGCTATATCG
GGAGGATACGCTTAAAATCATTCAAAAAAACCCATATCAATTGGTGGAAGATATTGAAGGGATCGGCTTTATTCGAGCGG
ATGAAATTGGGAGAGAACTTGGGATCTCCGGCAATCATCCCGACCGGCTGAAGGCGGCTTGTTTGTTCACTATTGAACAA
GATGCTGTAAAAGAAGGACATGTATATGTTACAAAAGTTCAGCTGATGGAAAAAGCGAAAAAATTGCTCACCCAAAATGG
AGAAGACATATCTGATCAGGATATTGAAAGAATCATTCTTGAATTGGAAGAAGATCGAAAAATTATCGTCGAGGAAGATC
GAATTTATTTACCCTCTCTTTACTATGCTGAAGTGGGACTTGCCAATAACATTGAAGAAATTTTAACCCAAAACCAATTT
CAAGATATGTTTCCTGAATCAGAATTTTTGCTGGAGTTAGGAAAACTGGAAGAAAAAATGAATGTTCAGTATGCCCCCTC
TCAAAAAGAAGCCATTCAGCGGGCTATTCATTCGCCGATTCTTTTGCTGACCGGCGGGCCTGGAACGGGAAAAACAACCG
TTATCAAAGGCATCGTTGAAATTTATGCGAACCTCCATGGCCTTTCATTGAACCCAAAAGAATATCAAAAGAAGGAAGAG
CCGTTTCCCATTGTACTGGTGGCACCTACTGGACGAGCTGCAAAAAGAATGGCAGAAGCAACCGGTCTTCCTGCCGTCAC
AATCCACCGCCTTTTAGGATGGAATGGTTCAGAAGGATTTGAACACAATGAGGATCATCCGATTTCTGGAAAGCTTCTGA
TTGTTGATGAAGTATCAATGGTTGATATTTGGCTCATGCATCAATTGTTTAAATCGCTTCCTTCGGACATACAAATTGTT
CTTGTTGGAGACGAACACCAACTTCCGTCCGTTGGACCCGGCCAAGTGCTTCGCGATTTGATTCAATCCGGACGAATCCC
AGTTGTTACGCTGACAGATATTTATAGACAAGCAGAAGGATCTACAATTATTGATTTGGCCCATTCAATCCGCCAAGGAA
CTCTTCCAGCGAACCTTTTGCAAACGACACAAGACAGATCGTTTATTCCTTGTACAACATCACAAATAAAAGAAGTTATA
ACGAGAGTAATTGAGAACGCTTTGAAAAAAGGATATTCTGCGAAGGATATACAGGTGTTGGCACCGATGTACAGAGGGAT
TGCCGGCATTGATCAGTTGAATGAAATGCTTCAGGAAATGTTAAACCCCCCTTCAAAAGAAAAAAGAGAGATCAAGCATG
GCAACGTTATTTACCGAATTGGGGACAAAGTGCTGCAGCTCGTCAATCAGCCTGATCAAAACGTGTTTAATGGCGATATT
GGGGAGATTGTTTCTATTTTTTACGCAAAAGAAAATGTCGAAAAAGAAGATATGGTGGTCATTTCTTACGACGGTATCGA
AGTAACCTATACGAAGCAAGATTTTAATCAGTTTACTCATGCTTACTGCTGCTCCATCCATAAAGCGCAGGGAAGCGAAT
TTCCGATTGTCATTTTGCCGGTAGTAAAAGGCTACTTTCGGATGTTGAGAAGAAATTTGATTTATACAGCTGTTACAAGG
AGCAAGCAATTTTTAATTATGTGCGGAGAATGGGAAGCGTTAAAAATGGGAGTATACAACAATCAGGAGTCGATGAGGCA
GACAACCTTAAAAGAGAGGCTGAAAACGTCTGAACTTGCCGAGCTGAAAGAGGAGCTTCCTTTTCCACTAGAAGATGCCA
ACATTGGGATGGAGAACATCACTCCATATGATTTTATGGAAGAGGGCGAAGGATAA

Domains

Predicted by InterproScan.

UvrD-like helicase C-terminal domain (UvrD_C_2)

(680-728)

Helix-hairpin-helix containing domain (HHH_RecD2)

(158-249)

AAA domain (AAA_30)

(344-553)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(593-659)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

63.613

99.368

0.632

Multiple sequence alignment