Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   DAETH_RS10705 Genome accession   NZ_AP026560
Coordinates   2131220..2131882 (+) Length   220 a.a.
NCBI ID   WP_264774886.1    Uniprot ID   -
Organism   Deinococcus aetherius strain ST0316     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2126220..2136882
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DAETH_RS10675 (DAETH_21410) - 2127798..2128295 (-) 498 WP_264774880.1 GNAT family N-acetyltransferase -
  DAETH_RS10680 (DAETH_21420) - 2128403..2128723 (-) 321 WP_264774881.1 DUF805 domain-containing protein -
  DAETH_RS10685 (DAETH_21430) - 2128877..2129122 (-) 246 WP_264774882.1 glutaredoxin family protein -
  DAETH_RS10690 (DAETH_21440) infC 2129279..2129854 (-) 576 WP_264774883.1 translation initiation factor IF-3 -
  DAETH_RS10695 (DAETH_21450) - 2130116..2130793 (+) 678 WP_264774884.1 NUDIX hydrolase -
  DAETH_RS10700 (DAETH_21460) - 2130883..2131173 (+) 291 WP_264774885.1 YbaB/EbfC family nucleoid-associated protein -
  DAETH_RS10705 (DAETH_21470) recR 2131220..2131882 (+) 663 WP_264774886.1 recombination mediator RecR Machinery gene
  DAETH_RS10710 (DAETH_21480) - 2131959..2132597 (+) 639 WP_264774887.1 GNAT family N-acetyltransferase -
  DAETH_RS10715 (DAETH_21490) - 2132643..2133125 (+) 483 WP_264774888.1 hypothetical protein -
  DAETH_RS10720 (DAETH_21500) - 2133499..2134092 (+) 594 WP_264774889.1 TetR/AcrR family transcriptional regulator -
  DAETH_RS10725 (DAETH_21510) - 2134089..2134826 (-) 738 WP_264774890.1 helical backbone metal receptor -
  DAETH_RS10730 (DAETH_21520) - 2134978..2135883 (+) 906 WP_264774891.1 cytochrome c -
  DAETH_RS10735 (DAETH_21530) - 2135936..2136781 (+) 846 WP_264774892.1 group III truncated hemoglobin -

Sequence

Protein


Download         Length: 220 a.a.        Molecular weight: 23835.28 Da        Isoelectric Point: 5.3479

>NTDB_id=96410 DAETH_RS10705 WP_264774886.1 2131220..2131882(+) (recR) [Deinococcus aetherius strain ST0316]
MKYPPSLVALIRELSRLPGIGPKSAQRLAFHLFEQPREDIERLAGALLSAKRELHTCPVCFNITDAELCDVCSDSSRDQG
TICVVEEPGDVIAIERSGEYRGLYHVLHGVLSPMNGVGPDRLHIRPLLPRVQEGMEVILATGTTVEGDATALYLQRLLEP
LGATVSRIAYGLPVGGALEYADEVTLGRALSGRQRVSQPPAFPPRRDDEPDGAAPVPSPR

Nucleotide


Download         Length: 663 bp        

>NTDB_id=96410 DAETH_RS10705 WP_264774886.1 2131220..2131882(+) (recR) [Deinococcus aetherius strain ST0316]
ATGAAGTACCCGCCTTCGCTGGTGGCCTTGATCCGGGAACTCTCGCGGCTGCCGGGGATCGGGCCGAAGAGTGCGCAGCG
GCTCGCCTTTCACCTGTTCGAACAGCCCAGGGAGGACATCGAGCGGCTGGCGGGGGCGCTGCTCTCGGCCAAGCGGGAGC
TGCACACCTGCCCGGTCTGCTTCAACATCACGGACGCGGAACTGTGCGACGTGTGCAGCGACTCCTCGCGCGACCAGGGG
ACGATCTGCGTGGTCGAGGAGCCCGGAGACGTGATCGCCATCGAGCGCAGCGGCGAGTACCGGGGGCTCTACCACGTGCT
GCACGGGGTCCTGAGCCCGATGAACGGGGTGGGGCCGGACCGGCTGCACATCCGCCCCCTGCTGCCGCGTGTGCAGGAGG
GCATGGAGGTCATCCTGGCGACGGGCACGACGGTCGAGGGGGACGCGACCGCGCTGTACCTCCAGCGCCTGCTCGAACCG
CTGGGTGCGACCGTGAGCCGCATCGCCTACGGCCTGCCGGTGGGCGGCGCCCTGGAGTACGCCGACGAGGTGACGCTGGG
CCGGGCGCTGAGCGGGCGCCAGCGGGTGAGCCAGCCGCCCGCCTTCCCCCCGCGCCGGGACGACGAGCCGGACGGGGCCG
CGCCCGTTCCCTCGCCACGTTAG

Domains

Predicted by InterproScan.

RecR protein (RecR_ZnF)

(40-78)

Toprim domain (Toprim_4)

(81-169)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

83.784

100

0.845

Multiple sequence alignment