Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   NSQ83_RS08900 Genome accession   NZ_CP150157
Coordinates   1695391..1696170 (+) Length   259 a.a.
NCBI ID   WP_003220850.1    Uniprot ID   G4NSM6
Organism   Bacillus sp. PS217     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1690391..1701170
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NSQ83_RS08880 (NSQ83_08880) trmFO 1691084..1692391 (+) 1308 WP_003244725.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  NSQ83_RS08885 (NSQ83_08885) xerC 1692459..1693373 (+) 915 WP_003231988.1 tyrosine recombinase XerC -
  NSQ83_RS08890 (NSQ83_08890) clpQ 1693386..1693931 (+) 546 WP_003238555.1 ATP-dependent protease subunit ClpQ -
  NSQ83_RS08895 (NSQ83_08895) hslU 1693939..1695351 (+) 1413 WP_256683486.1 HslU--HslV peptidase ATPase subunit -
  NSQ83_RS08900 (NSQ83_08900) codY 1695391..1696170 (+) 780 WP_003220850.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  NSQ83_RS08905 (NSQ83_08905) flgB 1696550..1696939 (+) 390 WP_003245656.1 flagellar basal body rod protein FlgB -
  NSQ83_RS08910 (NSQ83_08910) flgC 1696939..1697391 (+) 453 WP_003245521.1 flagellar basal body rod protein FlgC -
  NSQ83_RS08915 (NSQ83_08915) fliE 1697402..1697722 (+) 321 WP_003238544.1 flagellar hook-basal body complex protein FliE -
  NSQ83_RS08920 (NSQ83_08920) fliF 1697768..1699378 (+) 1611 WP_051388163.1 flagellar basal-body MS-ring/collar protein FliF -
  NSQ83_RS08925 (NSQ83_08925) fliG 1699391..1700407 (+) 1017 WP_003231981.1 flagellar motor switch protein FliG -
  NSQ83_RS08930 (NSQ83_08930) fliH 1700400..1701152 (+) 753 WP_198878776.1 flagellar assembly protein FliH -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29013.22 Da        Isoelectric Point: 4.6514

>NTDB_id=963821 NSQ83_RS08900 WP_003220850.1 1695391..1696170(+) (codY) [Bacillus sp. PS217]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTKNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFNDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=963821 NSQ83_RS08900 WP_003220850.1 1695391..1696170(+) (codY) [Bacillus sp. PS217]
ATGGCTTTATTACAAAAAACAAGAATTATTAACTCCATGCTGCAAGCTGCGGCAGGGAAACCGGTAAACTTCAAGGAAAT
GGCGGAGACGCTGCGGGATGTAATTGATTCCAATATTTTCGTTGTAAGCCGCAGAGGGAAACTCCTTGGGTATTCTATTA
ACCAGCAAATTGAAAATGATCGTATGAAAAAAATGCTTGAGGATCGTCAATTCCCTGAAGAATATACGAAAAATCTGTTT
AATGTCCCTGAAACATCTTCTAACTTGGATATTAATAGTGAATATACTGCTTTCCCTGTTGAGAACAGAGACCTGTTTCA
AGCTGGTTTAACAACAATTGTGCCGATCATCGGAGGCGGGGAAAGATTAGGAACACTTATTCTTTCACGTTTACAAGATC
AATTCAATGACGATGACTTAATTCTAGCTGAATACGGCGCAACAGTTGTCGGAATGGAAATCCTAAGAGAAAAAGCAGAA
GAAATTGAAGAGGAAGCAAGAAGCAAAGCTGTCGTACAAATGGCTATCAGCTCGCTTTCTTACAGTGAACTTGAAGCAAT
TGAGCACATTTTTGAGGAGCTTGACGGAAACGAAGGTCTTCTTGTTGCAAGTAAAATTGCTGACCGTGTCGGCATTACCC
GTTCTGTTATTGTGAACGCACTCAGAAAGCTGGAGAGCGCCGGTGTTATCGAGTCTAGATCATTAGGAATGAAAGGTACT
TATATCAAGGTACTAAACAACAAATTCCTAATTGAATTAGAAAATCTAAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY helix-turn-helix domain (HTH_CodY)

(198-255)

CodY GAF-like domain (CodY)

(3-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NSM6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

100

100

1
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.451

98.456

0.467