Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   NSQ16_RS08680 Genome accession   NZ_CP150155
Coordinates   1662145..1662924 (+) Length   259 a.a.
NCBI ID   WP_003220850.1    Uniprot ID   G4NSM6
Organism   Bacillus sp. PS108     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1657145..1667924
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NSQ16_RS08660 (NSQ16_08660) trmFO 1657838..1659145 (+) 1308 WP_003244725.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  NSQ16_RS08665 (NSQ16_08665) xerC 1659213..1660127 (+) 915 WP_003231988.1 tyrosine recombinase XerC -
  NSQ16_RS08670 (NSQ16_08670) clpQ 1660140..1660685 (+) 546 WP_128992832.1 ATP-dependent protease subunit ClpQ -
  NSQ16_RS08675 (NSQ16_08675) hslU 1660693..1662105 (+) 1413 WP_256683486.1 HslU--HslV peptidase ATPase subunit -
  NSQ16_RS08680 (NSQ16_08680) codY 1662145..1662924 (+) 780 WP_003220850.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  NSQ16_RS08685 (NSQ16_08685) flgB 1663304..1663693 (+) 390 WP_003245656.1 flagellar basal body rod protein FlgB -
  NSQ16_RS08690 (NSQ16_08690) flgC 1663693..1664145 (+) 453 WP_003245521.1 flagellar basal body rod protein FlgC -
  NSQ16_RS08695 (NSQ16_08695) fliE 1664156..1664476 (+) 321 WP_003238544.1 flagellar hook-basal body complex protein FliE -
  NSQ16_RS08700 (NSQ16_08700) fliF 1664522..1666132 (+) 1611 WP_087614551.1 flagellar basal-body MS-ring/collar protein FliF -
  NSQ16_RS08705 (NSQ16_08705) fliG 1666145..1667161 (+) 1017 WP_003231981.1 flagellar motor switch protein FliG -
  NSQ16_RS08710 (NSQ16_08710) fliH 1667154..1667906 (+) 753 WP_003244804.1 flagellar assembly protein FliH -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29013.22 Da        Isoelectric Point: 4.6514

>NTDB_id=963656 NSQ16_RS08680 WP_003220850.1 1662145..1662924(+) (codY) [Bacillus sp. PS108]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTKNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFNDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=963656 NSQ16_RS08680 WP_003220850.1 1662145..1662924(+) (codY) [Bacillus sp. PS108]
ATGGCTTTATTACAAAAAACAAGAATTATTAACTCCATGCTGCAAGCTGCGGCAGGGAAACCGGTAAACTTCAAGGAAAT
GGCGGAGACGCTACGGGATGTAATTGATTCCAATATTTTCGTTGTAAGCCGCAGAGGGAAACTCCTTGGGTATTCTATTA
ACCAGCAAATTGAAAATGATCGTATGAAAAAAATGCTTGAGGATCGTCAATTCCCTGAAGAATATACGAAAAATCTGTTT
AATGTCCCTGAAACATCTTCTAACTTGGATATTAATAGTGAATATACTGCTTTCCCTGTTGAGAACAGAGACCTGTTTCA
AGCTGGTTTAACAACAATTGTGCCGATCATCGGAGGCGGGGAAAGATTAGGAACACTTATTCTTTCACGTTTACAAGATC
AATTCAATGACGATGACTTAATTCTAGCTGAATACGGCGCAACAGTTGTCGGAATGGAAATCCTAAGAGAAAAAGCAGAA
GAAATTGAAGAGGAAGCAAGAAGCAAAGCTGTCGTACAAATGGCTATCAGCTCGCTTTCTTACAGTGAGCTTGAAGCAAT
TGAGCACATTTTTGAGGAGCTTGACGGAAACGAAGGTCTTCTTGTTGCAAGTAAAATTGCTGACCGTGTAGGCATTACCC
GTTCTGTTATTGTGAACGCACTCAGAAAGCTGGAGAGCGCCGGTGTTATCGAGTCTAGATCATTAGGAATGAAAGGTACT
TATATCAAGGTACTAAACAACAAATTCCTAATTGAATTAGAAAATCTAAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY helix-turn-helix domain (HTH_CodY)

(198-255)

CodY GAF-like domain (CodY)

(3-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NSM6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

100

100

1
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.451

98.456

0.467