Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   NSQ66_RS15405 Genome accession   NZ_CP150150
Coordinates   3503823..3505574 (-) Length   583 a.a.
NCBI ID   WP_036677198.1    Uniprot ID   A0A1R0X3U7
Organism   Paenibacillus sp. FSL H3-0329     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 3498823..3510574
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NSQ66_RS15390 (NSQ66_15390) - 3499372..3500307 (+) 936 WP_081383287.1 carbohydrate ABC transporter permease -
  NSQ66_RS15395 (NSQ66_15395) - 3500398..3501960 (+) 1563 WP_076141243.1 ABC transporter substrate-binding protein -
  NSQ66_RS15400 (NSQ66_15400) rcrQ 3502063..3503823 (-) 1761 WP_036677200.1 ABC transporter ATP-binding protein Regulator
  NSQ66_RS15405 (NSQ66_15405) rcrP 3503823..3505574 (-) 1752 WP_036677198.1 ABC transporter ATP-binding protein Regulator
  NSQ66_RS15410 (NSQ66_15410) - 3505694..3506749 (-) 1056 WP_081383663.1 HAMP domain-containing sensor histidine kinase -
  NSQ66_RS15415 (NSQ66_15415) - 3506746..3507420 (-) 675 WP_036677195.1 response regulator transcription factor -
  NSQ66_RS15420 (NSQ66_15420) - 3507745..3508710 (+) 966 WP_036677191.1 aldo/keto reductase -
  NSQ66_RS15425 (NSQ66_15425) - 3508747..3509598 (+) 852 WP_036677189.1 aldo/keto reductase -

Sequence

Protein


Download         Length: 583 a.a.        Molecular weight: 63919.48 Da        Isoelectric Point: 7.1913

>NTDB_id=963463 NSQ66_RS15405 WP_036677198.1 3503823..3505574(-) (rcrP) [Paenibacillus sp. FSL H3-0329]
MVTILKYLKPKEWALIGISILFIVTQVWLDLELPGYMSEITRLVQIPGSEMSEIIAAGGWMLLCALGSLATSIIVAGIAA
KIAANFSSRLRSKLFDKVQSFSMEEINNFSTASLITRSTNDITQVQMLIVIGLQLLVKAPILAVWAMLKITGKSWQWSLA
TGVAIGVLILIVGIVIVLVLPKFQKLQQLTDNLNRVARENLTGLRVIRAYNAESYQEDKFSVANSELTRTNLFANNVLSM
MMPSISLIMSGLSLAIYWIGAILIQNANGTAKMGLFSDMIVFSSYAMQVVMAFMMLIMIFILMPRAHVSAKRINEVLDTK
PSLENGSLTTSKTNRLGEVEFKKVSFKYPDAEEYVIEDISFTVKKGETVAFIGSTGCGKSTVVNLIPRFYDATAGEVLVD
GINVNQYEQTALRNKMGYVSQKAILFGGTVSSNVAFGDNGSDLSSDVVDAIYTSQASDFVEKMEGSYEAHVSQGGTNLSG
GQKQRLSIARAIARCPEILIFDDSFSALDYKTDRKLRSELKKKSSGTTILIVAQRIGTIKDADKIIVLEAGRMAGMGTHD
ELMQTCDVYQEIAYSQLSKEELA

Nucleotide


Download         Length: 1752 bp        

>NTDB_id=963463 NSQ66_RS15405 WP_036677198.1 3503823..3505574(-) (rcrP) [Paenibacillus sp. FSL H3-0329]
ATGGTAACTATACTTAAGTACTTAAAACCGAAGGAATGGGCCCTAATCGGTATCAGCATCCTATTCATTGTTACACAGGT
ATGGTTGGATCTGGAATTGCCCGGTTATATGAGCGAGATTACTCGTCTTGTACAGATACCAGGAAGCGAAATGAGCGAAA
TCATTGCAGCCGGAGGCTGGATGTTGCTCTGTGCCCTCGGCAGCTTAGCCACATCAATCATAGTGGCAGGGATCGCCGCT
AAAATTGCCGCTAACTTCTCTTCAAGATTACGCTCCAAATTGTTTGATAAGGTACAGTCTTTTTCTATGGAAGAAATCAA
CAACTTCTCTACAGCTAGTTTAATTACCCGTTCAACGAATGACATTACACAAGTGCAAATGCTGATTGTCATTGGTCTGC
AACTGCTGGTGAAGGCTCCCATCCTTGCCGTTTGGGCAATGCTCAAAATTACAGGCAAGAGTTGGCAGTGGTCGCTTGCT
ACCGGTGTCGCAATTGGGGTATTGATTCTTATTGTCGGCATAGTGATCGTGCTTGTGCTTCCGAAATTCCAAAAATTGCA
GCAACTGACTGATAATCTTAATCGTGTTGCAAGAGAGAATCTTACCGGTCTTCGTGTCATTCGTGCTTATAATGCGGAAA
GTTACCAGGAAGATAAATTTAGCGTAGCCAACAGCGAGCTTACCCGAACGAATTTATTTGCCAACAATGTACTGTCCATG
ATGATGCCAAGTATTTCTCTCATTATGAGCGGTTTAAGTCTCGCAATATATTGGATTGGTGCTATTTTGATTCAAAATGC
CAATGGTACGGCGAAGATGGGCTTATTTTCAGATATGATTGTCTTCTCATCCTATGCGATGCAGGTGGTTATGGCATTCA
TGATGCTGATCATGATTTTTATCCTGATGCCTCGTGCCCATGTATCCGCTAAAAGAATCAATGAAGTGTTGGATACTAAG
CCAAGCTTAGAGAACGGATCACTTACTACCTCCAAGACAAATCGGTTGGGTGAAGTCGAATTCAAAAAAGTCAGCTTTAA
ATATCCGGATGCAGAAGAATACGTTATTGAGGATATCAGCTTTACGGTGAAAAAAGGAGAAACTGTGGCCTTCATCGGTT
CAACCGGATGCGGAAAAAGTACTGTAGTGAACCTGATCCCTCGCTTTTATGATGCTACAGCAGGTGAAGTGTTGGTGGAC
GGTATTAATGTTAACCAATATGAGCAAACTGCACTGCGCAATAAAATGGGATATGTATCTCAGAAAGCGATTTTGTTTGG
CGGCACGGTGAGCTCTAATGTTGCTTTTGGCGACAATGGCAGTGATCTGTCCTCTGATGTTGTAGATGCCATTTACACCT
CTCAAGCTTCAGATTTTGTTGAAAAGATGGAAGGAAGCTACGAGGCTCATGTCTCTCAAGGCGGTACGAACTTGTCTGGC
GGTCAAAAGCAACGTCTTTCCATTGCCCGAGCCATTGCCCGTTGTCCTGAAATATTGATCTTCGACGATTCCTTCTCAGC
ACTTGATTATAAGACGGATCGCAAATTGCGTAGTGAATTGAAGAAGAAATCTAGCGGTACGACGATACTAATCGTTGCGC
AGCGGATCGGTACAATCAAAGACGCAGATAAAATCATTGTACTGGAAGCCGGACGAATGGCAGGCATGGGAACACATGAT
GAATTGATGCAGACCTGTGATGTCTACCAAGAGATTGCTTACTCACAACTTTCAAAGGAGGAGCTAGCTTAA

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(17-293)

ABC transporter (ABC_tran)

(357-504)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1R0X3U7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

52.013

100

0.532