Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   NST94_RS14930 Genome accession   NZ_CP150146
Coordinates   3409384..3411135 (-) Length   583 a.a.
NCBI ID   WP_339281029.1    Uniprot ID   -
Organism   Paenibacillus sp. FSL H8-0282     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 3404384..3416135
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NST94_RS14915 (NST94_14915) - 3404933..3405868 (+) 936 WP_081383287.1 carbohydrate ABC transporter permease -
  NST94_RS14920 (NST94_14920) - 3405959..3407521 (+) 1563 WP_076130604.1 ABC transporter substrate-binding protein -
  NST94_RS14925 (NST94_14925) rcrQ 3407624..3409384 (-) 1761 WP_036677200.1 ABC transporter ATP-binding protein Regulator
  NST94_RS14930 (NST94_14930) rcrP 3409384..3411135 (-) 1752 WP_339281029.1 ABC transporter ATP-binding protein Regulator
  NST94_RS14935 (NST94_14935) - 3411255..3412310 (-) 1056 WP_081383288.1 HAMP domain-containing sensor histidine kinase -
  NST94_RS14940 (NST94_14940) - 3412307..3412981 (-) 675 WP_036677195.1 response regulator transcription factor -
  NST94_RS14945 (NST94_14945) - 3413307..3414272 (+) 966 WP_339281030.1 aldo/keto reductase -
  NST94_RS14950 (NST94_14950) - 3414309..3415160 (+) 852 WP_076281834.1 aldo/keto reductase -

Sequence

Protein


Download         Length: 583 a.a.        Molecular weight: 63895.35 Da        Isoelectric Point: 6.8711

>NTDB_id=963324 NST94_RS14930 WP_339281029.1 3409384..3411135(-) (rcrP) [Paenibacillus sp. FSL H8-0282]
MVTILKYLKPKEWALIGISILFIVTQVWLDLELPGYMSEITRLVQIPGSEMSEIIAAGGWMLLCALGSLATSIIVAGIAA
KIAANFSSRLRSKLFDKVQSFSMEEINNFSTASLITRSTNDITQVQMLIVIGLQLLVKAPILAVWAMLKITGKSWQWSLA
TGVAIGVLILIVGIVIVLVLPKFQKLQQLTDNLNRVARENLTGLRVIRAYNAESYQEDKFSVANSELTRTNLFANNVLSM
MMPSISLIMSGLSLAIYWIGAILIQNANGTAKMGLFSDMIVFSSYAMQVVMAFMMLIMIFILMPRAHVSAKRINEVLDTK
PSLENGSLTSSKANRLGEVEFKNVSFKYPDAEEYVIEDISFTVKKGETVAFIGSTGCGKSTVVNLIPHFYDATAGEVLVD
GINVNQYEQTALRNKMGYVSQKAILFGGTVSSNVAFGDNGSDLSSDVVDAIYTSQASDFVEKMEGSYEAHVSQGGTNLSG
GQKQRLSIARAIARRPEILIFDDSFSALDYKTDRKLRSELKKKSSGTTILIVAQRIGTIKDADKIIVLEAGRMAGMGTHD
ELMQTCDVYQEIAYSQLSKEELA

Nucleotide


Download         Length: 1752 bp        

>NTDB_id=963324 NST94_RS14930 WP_339281029.1 3409384..3411135(-) (rcrP) [Paenibacillus sp. FSL H8-0282]
ATGGTAACTATACTTAAGTACTTAAAACCGAAGGAATGGGCCCTAATCGGTATCAGCATCCTATTCATTGTCACACAGGT
ATGGCTGGATCTGGAATTGCCCGGTTATATGAGCGAGATTACTCGTCTTGTACAGATACCAGGGAGTGAAATGAGCGAAA
TCATTGCAGCCGGAGGCTGGATGTTGCTCTGTGCCCTCGGCAGCTTAGCCACATCAATTATAGTGGCAGGGATCGCCGCT
AAAATTGCCGCCAACTTCTCTTCAAGATTACGCTCCAAATTGTTTGATAAGGTACAGTCTTTCTCTATGGAAGAAATCAA
CAACTTCTCTACAGCTAGTTTAATTACCCGTTCAACAAATGACATTACACAAGTGCAAATGCTGATTGTCATCGGTCTGC
AACTGCTGGTGAAGGCTCCCATCCTTGCCGTTTGGGCAATGCTCAAAATTACAGGCAAGAGTTGGCAGTGGTCGCTTGCT
ACCGGTGTCGCCATTGGGGTATTGATTCTTATTGTCGGCATAGTGATCGTGCTAGTGCTTCCGAAATTCCAAAAATTGCA
GCAACTGACTGATAATCTTAATCGTGTTGCAAGAGAGAATCTTACCGGCCTTCGTGTCATTCGTGCGTATAATGCGGAAA
GTTACCAGGAAGATAAATTTAGCGTAGCCAACAGCGAGCTTACCCGAACGAATTTATTCGCCAATAATGTACTGTCCATG
ATGATGCCAAGTATTTCTCTGATTATGAGCGGTTTAAGTCTCGCAATATATTGGATTGGTGCTATTTTGATTCAAAATGC
CAATGGTACGGCGAAGATGGGCTTATTTTCAGATATGATTGTCTTCTCATCCTATGCGATGCAGGTGGTTATGGCATTCA
TGATGCTGATCATGATTTTTATCCTGATGCCTCGTGCCCATGTATCCGCTAAAAGAATCAATGAAGTGCTGGATACTAAG
CCAAGCTTAGAGAACGGATCACTTACTTCCTCCAAGGCAAATCGGTTGGGTGAGGTCGAATTCAAAAATGTCAGCTTTAA
ATATCCGGATGCAGAAGAATACGTTATTGAAGATATCAGCTTTACGGTGAAAAAAGGAGAAACTGTAGCCTTCATCGGTT
CAACCGGATGCGGAAAAAGTACCGTCGTGAACCTGATTCCTCACTTTTATGATGCTACAGCAGGTGAAGTGTTGGTGGAT
GGAATTAATGTTAACCAATATGAGCAAACTGCACTGCGCAATAAAATGGGATATGTATCGCAGAAAGCGATTTTGTTTGG
CGGCACGGTGAGCTCTAATGTTGCTTTTGGCGATAATGGCAGTGATCTGTCCTCTGATGTTGTTGATGCCATTTACACCT
CTCAAGCTTCAGATTTTGTTGAAAAGATGGAAGGAAGCTACGAGGCTCATGTCTCTCAAGGCGGTACGAACTTGTCTGGC
GGTCAAAAACAACGTCTTTCCATTGCCCGAGCCATTGCCCGTCGTCCTGAAATATTAATCTTCGACGATTCCTTCTCAGC
GCTTGATTATAAGACGGATCGCAAATTGCGAAGTGAATTGAAGAAAAAATCCAGCGGTACAACGATACTAATCGTTGCCC
AACGGATCGGTACAATCAAAGATGCAGACAAAATCATTGTACTGGAAGCCGGACGAATGGCAGGCATGGGAACACATGAT
GAATTGATGCAGACCTGTGATGTCTACCAAGAGATTGCTTACTCACAACTTTCAAAGGAGGAGCTAGCTTAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(357-504)

ABC transporter transmembrane region (ABC_membrane)

(17-293)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

51.846

100

0.53