Detailed information    

insolico Bioinformatically predicted

Overview

Name   recJ   Type   Machinery gene
Locus tag   NSS59_RS12235 Genome accession   NZ_CP150143
Coordinates   2482459..2484819 (-) Length   786 a.a.
NCBI ID   WP_404996081.1    Uniprot ID   -
Organism   Caldifermentibacillus hisashii isolate FSL K6-5071     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2477459..2489819
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NSS59_RS12215 (NSS59_12190) - 2478338..2478514 (-) 177 WP_034771312.1 hypothetical protein -
  NSS59_RS12220 (NSS59_12195) dtd 2478813..2479265 (-) 453 WP_404996079.1 D-aminoacyl-tRNA deacylase -
  NSS59_RS12225 (NSS59_12200) - 2479279..2481471 (-) 2193 WP_404996080.1 RelA/SpoT family protein -
  NSS59_RS12230 (NSS59_12205) - 2481956..2482468 (-) 513 WP_041846212.1 adenine phosphoribosyltransferase -
  NSS59_RS12235 (NSS59_12210) recJ 2482459..2484819 (-) 2361 WP_404996081.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  NSS59_RS12240 (NSS59_12215) secDF 2484929..2487190 (-) 2262 WP_404996082.1 protein translocase subunit SecDF -
  NSS59_RS12245 (NSS59_12220) - 2487317..2487616 (-) 300 WP_052480435.1 post-transcriptional regulator -
  NSS59_RS12250 (NSS59_12225) spoVB 2487749..2489299 (+) 1551 WP_108898342.1 stage V sporulation protein B -

Sequence

Protein


Download         Length: 786 a.a.        Molecular weight: 89071.55 Da        Isoelectric Point: 6.0259

>NTDB_id=963217 NSS59_RS12235 WP_404996081.1 2482459..2484819(-) (recJ) [Caldifermentibacillus hisashii isolate FSL K6-5071]
MLQAKTRWAVREGNRQKAEQLMNELQLTPLVANLLVNRGLDTAESVKKFLNPDEEFHHPFLLNDMDICVERIFRAIRNRE
RMVVYGDYDADGVTSTYVLLKTLRELGADADFYIPNRFTEGYGPNEKAFRTLKEAGYHLIITVDNGIAGIHEAKVAKEIG
IDLIITDHHEPGPELPDCLAIIHPKRADSNYPFKDLAGVGVAFKLVTALLGKVPEELLPFAAIGTIADLVPLKDENRLIV
KKALPLLQSSDHFGLKALMRVAGINQQELNEESISFGLAPRINAPGRLYHAGMVVDLFLANDKDEAEQLAHEINEINKER
QEIVDKITVEAIEEISQSSNYIDDQVIVVGKEGWHAGVIGIVASRLVEKFYRPVIVFSFDQATGLAKGSARSIPKFNMYQ
NLFQCKELLPHFGGHPMAAGLTMKISDVPELRERLNRLASEQLDEEDFIPVTEVDGMIPLEDIHLQSVKELLQFAPFGTE
NPKPLLLINDIQLPQIKKVGADKNHLKAIIENHSAQLDCIGFHMGDLADEISPLSKASVIGELAINEWNHVSKPQFILKD
ICIDEWQLFDYRGNRRIDQWIHQVPEKSSKLIVFRKSTVNQMNLSEFAAGLEIIHSEASAKNCDIDGMNIVLIDLPQSKK
QLESLLAGKQVARIYAHFYQDDIELLNTMPTREHFKWMYAFLHKKGVFDFRRYGAELAKYKGWSLHTIKFMLTVFFELNF
VTMDNGILSVIKNPSKRDLSESKTYQLRQEIIQLEKELLFSSYKQLKNSLDRFIGTANMKEAKAWI

Nucleotide


Download         Length: 2361 bp        

>NTDB_id=963217 NSS59_RS12235 WP_404996081.1 2482459..2484819(-) (recJ) [Caldifermentibacillus hisashii isolate FSL K6-5071]
ATGTTGCAAGCAAAGACGCGTTGGGCGGTTCGAGAAGGAAATCGTCAAAAAGCGGAACAATTAATGAATGAACTGCAGTT
GACACCTCTAGTAGCAAATTTATTAGTCAATCGAGGTTTAGATACGGCTGAAAGTGTAAAGAAATTTTTAAATCCGGATG
AAGAGTTTCACCATCCTTTTTTGCTTAATGATATGGATATATGTGTTGAACGAATTTTTCGGGCAATTCGAAATCGTGAG
CGAATGGTCGTGTATGGCGACTATGATGCCGATGGAGTAACAAGTACTTATGTATTATTGAAAACATTACGTGAACTCGG
TGCGGATGCCGATTTTTATATACCAAATCGCTTCACGGAAGGATACGGCCCAAATGAAAAAGCATTTCGAACACTGAAAG
AAGCCGGTTACCATTTAATTATCACGGTTGATAACGGAATTGCCGGGATTCATGAAGCAAAAGTGGCAAAAGAAATTGGT
ATTGATTTAATCATCACCGATCATCACGAACCCGGACCGGAACTCCCGGATTGTTTGGCGATTATTCATCCGAAGAGGGC
TGATTCCAATTACCCGTTTAAAGATTTAGCCGGTGTCGGTGTCGCGTTTAAATTGGTGACAGCTCTTTTAGGGAAAGTTC
CGGAAGAATTGCTTCCATTTGCAGCAATCGGAACTATAGCTGATTTAGTACCTCTCAAAGATGAAAATCGCTTGATAGTA
AAAAAAGCATTACCTCTCTTACAATCGTCGGATCATTTTGGTTTAAAGGCGTTAATGCGGGTTGCCGGAATCAATCAGCA
AGAATTAAATGAAGAATCAATTAGTTTTGGACTAGCCCCGCGGATAAACGCTCCCGGAAGATTATACCATGCCGGTATGG
TCGTTGATTTATTTTTGGCAAATGATAAAGATGAGGCTGAACAATTGGCCCATGAAATTAATGAAATCAATAAAGAAAGA
CAAGAAATCGTCGATAAAATAACTGTTGAAGCGATTGAGGAAATTTCTCAATCATCAAATTACATAGACGATCAGGTCAT
TGTGGTCGGTAAGGAAGGCTGGCATGCAGGGGTCATTGGCATTGTTGCTTCCAGATTAGTGGAAAAATTTTATCGGCCAG
TTATTGTTTTTTCTTTTGATCAAGCAACAGGATTGGCTAAGGGTTCGGCAAGAAGTATTCCAAAATTTAATATGTATCAA
AATTTGTTCCAATGTAAAGAACTTTTGCCGCATTTTGGCGGACACCCGATGGCTGCCGGGCTGACTATGAAAATCTCAGA
TGTTCCGGAATTAAGGGAACGGTTGAACCGGTTGGCAAGTGAACAATTAGATGAAGAGGATTTTATCCCGGTTACTGAAG
TCGATGGGATGATTCCATTGGAGGATATCCATTTGCAATCTGTTAAGGAATTGCTTCAGTTTGCCCCGTTTGGAACAGAA
AATCCAAAACCATTGCTTTTAATAAATGATATTCAATTGCCACAAATCAAAAAAGTCGGTGCAGATAAAAATCATCTGAA
AGCAATCATTGAAAACCATTCGGCTCAACTTGATTGTATCGGTTTTCATATGGGGGATCTTGCCGATGAAATATCACCAT
TATCGAAAGCTTCGGTCATTGGAGAGTTAGCGATTAATGAATGGAATCATGTCAGTAAACCGCAGTTCATATTAAAAGAT
ATTTGTATTGATGAATGGCAATTGTTTGATTATCGAGGTAACCGAAGAATCGACCAGTGGATTCATCAAGTGCCGGAAAA
AAGCAGTAAACTGATTGTTTTTCGCAAATCCACCGTCAACCAAATGAATTTATCCGAGTTCGCTGCCGGTCTTGAAATCA
TCCATTCTGAAGCCTCAGCGAAAAATTGTGATATCGACGGAATGAACATTGTTCTAATTGATTTACCCCAATCAAAAAAA
CAATTAGAGTCATTATTGGCAGGAAAGCAGGTTGCAAGAATTTATGCCCATTTTTATCAAGACGATATCGAACTCTTAAA
TACGATGCCGACAAGAGAACATTTTAAATGGATGTATGCATTCTTGCATAAAAAAGGTGTGTTTGATTTCCGGCGTTATG
GAGCCGAATTGGCGAAATATAAAGGATGGTCACTTCATACCATAAAATTTATGCTAACGGTGTTTTTTGAACTAAATTTT
GTTACAATGGATAATGGTATTCTTTCAGTTATAAAAAATCCGTCAAAACGAGATTTATCAGAATCGAAAACTTACCAATT
AAGACAGGAAATTATTCAATTGGAAAAAGAGTTGCTCTTTTCATCCTATAAACAATTAAAAAATAGTCTCGATAGATTTA
TCGGTACCGCAAATATGAAGGAGGCAAAGGCATGGATTTAG

Domains

Predicted by InterproScan.

Single-strand DNA-specific exonuclease, C terminal domain (ssDNA-exonuc_C)

(567-768)

DHH family (DHH)

(82-225)

DHHA1 domain (DHHA1)

(308-437)

RecJ OB domain (RecJ_OB)

(454-560)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recJ Bacillus subtilis subsp. subtilis str. 168

51.742

98.601

0.51