Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   NSS59_RS12155 Genome accession   NZ_CP150143
Coordinates   2464623..2467019 (-) Length   798 a.a.
NCBI ID   WP_404996075.1    Uniprot ID   -
Organism   Caldifermentibacillus hisashii isolate FSL K6-5071     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2459623..2472019
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NSS59_RS12135 (NSS59_12110) - 2459716..2459985 (-) 270 WP_404996072.1 IreB family regulatory phosphoprotein -
  NSS59_RS12140 (NSS59_12115) alaS 2460209..2462839 (-) 2631 WP_404996073.1 alanine--tRNA ligase -
  NSS59_RS12145 (NSS59_12120) - 2463213..2464280 (-) 1068 WP_404996074.1 AI-2E family transporter -
  NSS59_RS12150 (NSS59_12125) - 2464326..2464520 (-) 195 WP_034771285.1 hypothetical protein -
  NSS59_RS12155 (NSS59_12130) recD2 2464623..2467019 (-) 2397 WP_404996075.1 ATP-dependent RecD-like DNA helicase Machinery gene
  NSS59_RS12160 (NSS59_12135) mnmA 2467304..2468428 (-) 1125 WP_270577786.1 tRNA 2-thiouridine(34) synthase MnmA -
  NSS59_RS12165 (NSS59_12140) - 2468440..2469585 (-) 1146 WP_404996076.1 cysteine desulfurase family protein -
  NSS59_RS12170 (NSS59_12145) cymR 2469652..2470074 (-) 423 WP_041846217.1 cysteine metabolism transcriptional regulator CymR -
  NSS59_RS12175 (NSS59_12150) - 2470213..2470863 (-) 651 WP_095141276.1 YitT family protein -

Sequence

Protein


Download         Length: 798 a.a.        Molecular weight: 90498.59 Da        Isoelectric Point: 5.2959

>NTDB_id=963216 NSS59_RS12155 WP_404996075.1 2464623..2467019(-) (recD2) [Caldifermentibacillus hisashii isolate FSL K6-5071]
MQQEERYIKGRPIVTIFHNEQNLYTVLRIRVDESNEAGVNKDAVVTGYFPRLYEEETYIFYGKFTDHPKYGPQFQVDHFR
KDLPKTKQGVVQYLSSELFKGIGKKTAENIVDVLGENAIERIMKQPSLLDTVPKLAADKAKLLHEKLIEYQGLENIMVGL
NQYGFGPQLSMRIYQTYKEQTLEIVENNPYKLVEDIEGIGFGRADELGFKLGMKGNHPDRVKAGCLYTLETDCIQEGHCY
LEKKTFIPTVKKLLESNQPVEIFPEDIEHELLKLEKEGKIVIDEERVFLPSIFYSEKGLVTNIKRILAQKEFEAGFPESE
FLLALGSLEERLGIQYAPSQREAIQTALSSPMLILTGGPGTGKTTVIKGIVELYGELHGCSLDPNDYKKDEVFPFVLAAP
TGRAAKRMAESTGLPAVTIHRLLGWNGTETFDYNEDNPIEGKIVIIDEMSMVDIWLAHHLFKALPAHVQVILVGDEDQLP
SVGPGQVLKDLLASERIPTVRLTDIYRQESGSSIIQLAHAIKNGTIPEDLRKQQKDRSFISCRTTQVADVVKQVVGHAIN
KGYTPKDIQVLAPMYRGPAGIDELNILLQEILNGTNKEKQRELNFGDHTYRVGDKVLQLINQPDKNIFNGDIGEIVAIFY
AKETEEKVDQLVVSFDGNEVTYPRQDLHQITLAYCCSIHKSQGSEFPIVILPIVRGYHRMLRRNLIYTAITRSKEKLILC
GEEDAFRTAVYRTDDNMRNTTLKKRLLQEINGTHTPDIGVVKEDMSYEERLMNTDPMVGMENISPYDFMIEDRAEYLS

Nucleotide


Download         Length: 2397 bp        

>NTDB_id=963216 NSS59_RS12155 WP_404996075.1 2464623..2467019(-) (recD2) [Caldifermentibacillus hisashii isolate FSL K6-5071]
ATGCAACAAGAAGAACGTTATATTAAAGGGCGACCGATCGTCACAATTTTTCACAATGAACAAAATTTATATACCGTTCT
TCGGATTCGTGTCGATGAATCAAATGAGGCTGGTGTGAACAAAGATGCGGTTGTCACCGGTTATTTCCCCCGTCTGTATG
AAGAGGAAACATATATTTTTTACGGAAAGTTTACGGATCATCCAAAATACGGTCCACAATTTCAAGTTGACCATTTTCGA
AAAGATCTGCCAAAGACAAAACAAGGTGTTGTTCAATATTTATCAAGTGAACTTTTTAAAGGAATTGGAAAGAAAACGGC
CGAAAATATTGTGGACGTGCTGGGTGAAAATGCTATCGAACGCATCATGAAACAGCCGTCTTTATTGGACACGGTACCGA
AATTGGCTGCTGATAAAGCAAAATTGTTACATGAAAAATTAATAGAGTATCAAGGGTTAGAAAATATTATGGTCGGGTTG
AATCAATACGGGTTCGGTCCGCAGCTGTCTATGCGAATCTATCAAACATATAAAGAGCAAACACTGGAAATCGTCGAAAA
TAACCCGTATAAACTTGTGGAAGATATTGAAGGAATTGGCTTTGGTCGGGCAGATGAATTAGGCTTTAAACTTGGCATGA
AAGGAAATCATCCGGATCGGGTTAAGGCCGGTTGTTTATACACATTAGAAACAGATTGTATTCAAGAAGGTCATTGTTAT
TTGGAAAAGAAAACTTTCATTCCGACTGTTAAAAAGTTACTGGAATCTAACCAGCCGGTGGAAATTTTTCCGGAAGATAT
TGAGCATGAACTTTTGAAACTGGAAAAAGAAGGAAAGATCGTCATCGATGAGGAACGTGTATTTCTACCTTCCATTTTTT
ATTCGGAAAAAGGTTTGGTAACGAATATAAAAAGAATCTTGGCTCAAAAAGAATTTGAAGCCGGCTTTCCGGAATCGGAA
TTTCTACTTGCATTAGGTAGTTTAGAGGAACGGCTTGGTATTCAATATGCTCCGTCACAAAGGGAAGCAATTCAAACCGC
ACTCTCCAGTCCAATGTTAATTTTAACCGGCGGACCGGGAACGGGAAAAACGACGGTAATTAAAGGAATCGTTGAACTGT
ATGGAGAATTGCACGGTTGCAGTTTGGATCCAAATGACTATAAAAAGGATGAAGTGTTTCCGTTTGTGTTGGCTGCTCCA
ACCGGTCGGGCCGCAAAACGGATGGCGGAATCAACCGGTTTACCGGCAGTAACGATTCATCGATTACTCGGATGGAATGG
AACCGAAACCTTTGATTATAACGAAGATAATCCGATTGAAGGGAAGATTGTTATCATTGATGAGATGTCGATGGTTGACA
TTTGGCTTGCCCATCATTTATTTAAAGCTTTGCCTGCGCATGTGCAAGTAATTTTGGTCGGTGATGAAGATCAATTACCT
TCCGTTGGCCCGGGGCAAGTTTTGAAAGATTTATTAGCCTCAGAACGAATTCCGACCGTTCGTTTGACGGATATTTATCG
ACAAGAAAGCGGCTCATCCATTATTCAGCTTGCTCATGCCATAAAAAACGGGACGATACCGGAAGATTTAAGAAAGCAAC
AAAAGGATCGTTCATTCATTTCTTGCCGTACGACACAAGTTGCTGATGTCGTCAAGCAGGTCGTCGGACATGCAATCAAT
AAAGGTTATACACCTAAAGATATTCAAGTTTTGGCACCGATGTATCGGGGGCCGGCCGGAATTGATGAACTGAATATACT
TCTCCAAGAAATATTGAATGGAACGAACAAGGAAAAGCAAAGGGAATTAAACTTTGGCGACCATACTTACCGGGTTGGCG
ATAAAGTTTTGCAATTAATCAATCAACCGGATAAAAATATTTTTAACGGTGATATCGGTGAAATTGTAGCTATCTTTTAT
GCAAAAGAGACAGAGGAAAAAGTTGATCAACTGGTCGTTTCGTTTGACGGCAATGAAGTTACTTACCCGAGACAGGATTT
ACATCAAATTACCCTTGCCTATTGCTGCAGTATTCACAAATCGCAAGGGAGCGAATTTCCGATTGTCATTCTACCGATTG
TCAGAGGCTATCACCGGATGTTACGGAGAAATCTTATTTATACGGCCATCACGCGGAGTAAAGAAAAATTAATTTTATGC
GGGGAAGAGGATGCCTTTCGAACCGCCGTTTATCGTACGGATGATAATATGAGGAACACGACGTTAAAGAAACGATTATT
GCAAGAAATAAACGGAACTCACACTCCGGATATCGGGGTAGTGAAAGAAGATATGTCTTATGAAGAACGATTAATGAATA
CGGATCCGATGGTTGGCATGGAGAATATTAGCCCGTATGATTTCATGATTGAAGATAGAGCGGAATATTTAAGTTGA

Domains

Predicted by InterproScan.

UvrD-like helicase C-terminal domain (UvrD_C_2)

(673-720)

Helix-hairpin-helix containing domain (HHH_RecD2)

(150-240)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(584-655)

AAA domain (AAA_30)

(336-543)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

61.538

99.373

0.612