Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   AABJ45_RS07905 Genome accession   NZ_AP028611
Coordinates   1551871..1552659 (-) Length   262 a.a.
NCBI ID   WP_000940729.1    Uniprot ID   Q97PM1
Organism   Streptococcus pneumoniae strain Sep6     
Function   repress the expression of comX (predicted from homology)   
Competence regulation

Genomic Context

Location: 1546871..1557659
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AABJ45_RS07875 (TKY121527_15760) - 1547033..1547791 (-) 759 WP_001287230.1 class I SAM-dependent methyltransferase -
  AABJ45_RS07880 - 1547999..1548145 (+) 147 WP_000403100.1 hypothetical protein -
  AABJ45_RS07885 (TKY121527_15770) ugpC 1548292..1549422 (-) 1131 WP_000229961.1 sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC -
  AABJ45_RS07890 (TKY121527_15790) - 1549750..1551006 (+) 1257 WP_061714154.1 ISL3-like element IS1167A family transposase -
  AABJ45_RS07900 (TKY121527_15800) - 1551296..1551871 (-) 576 WP_000158721.1 isochorismatase family cysteine hydrolase -
  AABJ45_RS07905 (TKY121527_15810) codY 1551871..1552659 (-) 789 WP_000940729.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  AABJ45_RS07910 (TKY121527_15820) - 1552923..1554512 (-) 1590 WP_050232738.1 DEAD/DEAH box helicase -
  AABJ45_RS07915 (TKY121527_15830) - 1554711..1555937 (-) 1227 WP_000841576.1 OFA family MFS transporter -
  AABJ45_RS07920 (TKY121527_15840) - 1556130..1557446 (+) 1317 WP_126443162.1 FAD-containing oxidoreductase -

Sequence

Protein


Download         Length: 262 a.a.        Molecular weight: 29770.18 Da        Isoelectric Point: 5.7806

>NTDB_id=96215 AABJ45_RS07905 WP_000940729.1 1551871..1552659(-) (codY) [Streptococcus pneumoniae strain Sep6]
MAHLLEKTRKITSILKRSEEQLQDELPYNAITRQLADIIHCNACIINSKGRLLGYFMRYKTNTDRVEQFFQTKIFPDDYV
QGANMIYETEANLPVEHDMSIFPIESRDDFPDGLTTIAPIHVSGIRLGSLIIWRNDKKFEDEDLVLVEIASTVVGIQLLN
FQREEDEKNIRRRTAVTMAVNTLSYSELRAVSAILGELNGNEGKLTASVIADRIGITRSVIVNALRKLESAGIIESRSLG
MKGTYLKVLISDIFEEVKKRDY

Nucleotide


Download         Length: 789 bp        

>NTDB_id=96215 AABJ45_RS07905 WP_000940729.1 1551871..1552659(-) (codY) [Streptococcus pneumoniae strain Sep6]
ATGGCACATTTATTAGAAAAAACTAGAAAAATTACATCAATTTTGAAACGCTCAGAGGAGCAGTTGCAGGATGAGCTCCC
TTACAACGCTATTACGCGTCAGTTAGCGGATATTATTCATTGCAATGCCTGCATTATCAATAGTAAGGGACGTCTGCTTG
GCTATTTTATGCGTTATAAAACAAATACAGATCGCGTAGAGCAATTCTTCCAAACTAAGATTTTCCCAGATGACTACGTT
CAAGGGGCTAATATGATTTACGAAACAGAAGCAAACTTGCCTGTTGAGCATGATATGAGTATTTTCCCTATTGAGAGTAG
AGATGATTTTCCAGATGGCTTGACGACTATTGCACCGATTCATGTATCGGGGATTCGCCTTGGTTCTTTGATTATTTGGC
GTAATGATAAAAAATTCGAAGATGAGGACTTGGTTCTTGTTGAGATTGCCAGTACCGTTGTTGGGATTCAGCTTCTTAAC
TTCCAACGTGAAGAAGATGAGAAAAATATTCGTCGTCGTACTGCTGTCACCATGGCGGTCAATACCCTTTCTTACTCCGA
ACTCCGTGCTGTTTCAGCAATTTTAGGGGAATTAAATGGAAATGAAGGGAAGTTGACTGCGTCAGTGATTGCAGATCGTA
TCGGAATCACTCGCTCTGTGATTGTCAATGCTCTTCGTAAACTTGAGTCTGCGGGGATTATTGAAAGTCGCTCACTTGGA
ATGAAGGGAACCTATCTTAAGGTCTTGATTTCAGATATTTTTGAAGAAGTGAAGAAAAGAGATTACTAA

Domains

Predicted by InterProScan.

CodY GAF-like domain (CodY)

(3-182)

CodY helix-turn-helix domain (HTH_CodY)

(202-258)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q97PM1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Lactococcus lactis subsp. lactis strain DGCC12653

62.595

100

0.626
  codY Bacillus subtilis subsp. subtilis str. 168

47.967

93.893

0.45