Detailed information    

insolico Bioinformatically predicted

Overview

Name   ylbF   Type   Regulator
Locus tag   ACJED3_RS03480 Genome accession   NZ_CP174155
Coordinates   633262..633711 (-) Length   149 a.a.
NCBI ID   WP_003221370.1    Uniprot ID   G4NWT8
Organism   Bacillus subtilis strain G01     
Function   accelerate the production of Spo0A~P (predicted from homology)   
Competence regulation

Genomic Context

Location: 628262..638711
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACJED3_RS03450 sepM 628341..629366 (-) 1026 WP_003245451.1 protease DdcP Regulator
  ACJED3_RS03455 ylbK 629368..630150 (-) 783 WP_003232221.1 patatin family protein -
  ACJED3_RS03460 spoVV 630331..631557 (+) 1227 WP_014479716.1 dipicolinic acid transporter SpoVV -
  ACJED3_RS03465 coaD 631568..632053 (-) 486 WP_003245283.1 pantetheine-phosphate adenylyltransferase -
  ACJED3_RS03470 rsmD 632058..632612 (-) 555 WP_033881642.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  ACJED3_RS03475 ylbG 632935..633207 (-) 273 WP_009967171.1 YlbG family protein -
  ACJED3_RS03480 ylbF 633262..633711 (-) 450 WP_003221370.1 regulatory iron-sulfur-containing complex subunit RicF Regulator
  ACJED3_RS03485 ylbE 633827..634066 (-) 240 WP_003232231.1 YlbE-like family protein -
  ACJED3_RS03490 ylbD 634082..634480 (-) 399 WP_003232233.1 YlbD family protein -
  ACJED3_RS03495 ylbC 634712..635752 (-) 1041 WP_014479713.1 CAP domain-containing protein -
  ACJED3_RS03500 ylbB 635836..636282 (-) 447 WP_003221362.1 CBS domain-containing protein -
  ACJED3_RS03505 ylbA 636422..636784 (+) 363 WP_014479712.1 YugN family protein -
  ACJED3_RS03510 ctaG 636816..637709 (-) 894 WP_014479711.1 cytochrome c oxidase assembly factor CtaG -
  ACJED3_RS03515 ctaF 637737..638069 (-) 333 WP_014479710.1 cytochrome c oxidase subunit IVB -
  ACJED3_RS03520 ctaE 638072..638695 (-) 624 WP_003232244.1 cytochrome c oxidase subunit III -

Sequence

Protein


Download         Length: 149 a.a.        Molecular weight: 16913.96 Da        Isoelectric Point: 4.9284

>NTDB_id=961922 ACJED3_RS03480 WP_003221370.1 633262..633711(-) (ylbF) [Bacillus subtilis strain G01]
MYATMESVRLQSEAQQLAEMILQSETAENYRNCYKRLQEDEEAGRIIRSFIKIKEQYEDVQRFGKYHPDYREISRKMREI
KRELDLNDKVADFKRAENELQSILDEVSVEIGTAVSEHVKVPTGNPYFDGLSSCGGGCGSGGSCGCKVS

Nucleotide


Download         Length: 450 bp        

>NTDB_id=961922 ACJED3_RS03480 WP_003221370.1 633262..633711(-) (ylbF) [Bacillus subtilis strain G01]
ATGTATGCGACGATGGAATCCGTGCGGCTTCAAAGTGAAGCTCAGCAGCTTGCCGAGATGATTCTGCAGTCGGAGACGGC
TGAGAACTACCGCAATTGTTACAAGCGTCTCCAGGAAGATGAAGAGGCAGGTCGGATTATTCGTTCTTTTATCAAAATAA
AAGAGCAGTATGAGGATGTACAGCGTTTTGGCAAATATCATCCTGACTATAGAGAAATATCCCGGAAAATGAGGGAGATC
AAACGTGAGCTGGACCTGAACGACAAGGTGGCTGACTTCAAGAGAGCTGAAAATGAGCTCCAGTCCATTCTTGATGAGGT
CAGCGTTGAGATTGGGACAGCTGTTTCGGAGCATGTGAAAGTTCCGACTGGGAACCCTTATTTTGACGGTTTGTCTTCAT
GCGGAGGCGGCTGCGGTTCAGGCGGAAGCTGCGGATGTAAAGTGTCCTGA

Domains

Predicted by InterProScan.

Control of competence regulator ComK, YlbF/YmcA (Com_YlbF)

(12-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NWT8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ylbF Bacillus subtilis subsp. subtilis str. 168

100

100

1