Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   ACIX56_RS02625 Genome accession   NZ_CP173676
Coordinates   553416..554756 (+) Length   446 a.a.
NCBI ID   WP_405200801.1    Uniprot ID   -
Organism   Actinobacillus pleuropneumoniae strain APL2303082E     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 548416..559756
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACIX56_RS02600 (ACIX56_02600) msrB 548879..549274 (-) 396 WP_005620040.1 peptide-methionine (R)-S-oxide reductase MsrB -
  ACIX56_RS02605 (ACIX56_02605) gap 549497..550501 (+) 1005 WP_005620042.1 type I glyceraldehyde-3-phosphate dehydrogenase -
  ACIX56_RS02610 (ACIX56_02610) - 550697..551749 (+) 1053 WP_005607179.1 rod shape-determining protein -
  ACIX56_RS02615 (ACIX56_02615) mreC 551866..552915 (+) 1050 WP_005600525.1 rod shape-determining protein MreC -
  ACIX56_RS02620 (ACIX56_02620) mreD 552915..553403 (+) 489 WP_005596506.1 rod shape-determining protein MreD -
  ACIX56_RS02625 (ACIX56_02625) rarA 553416..554756 (+) 1341 WP_405200801.1 replication-associated recombination protein A Machinery gene
  ACIX56_RS02630 (ACIX56_02630) znuB 554837..555622 (+) 786 WP_005616958.1 zinc ABC transporter permease subunit ZnuB -
  ACIX56_RS02635 (ACIX56_02635) - 555801..556598 (+) 798 WP_005596509.1 class II glutamine amidotransferase -
  ACIX56_RS02640 (ACIX56_02640) - 556678..557754 (-) 1077 WP_005619029.1 homoserine O-acetyltransferase -
  ACIX56_RS02645 (ACIX56_02645) - 558046..558735 (+) 690 WP_005611655.1 vancomycin high temperature exclusion protein -

Sequence

Protein


Download         Length: 446 a.a.        Molecular weight: 50313.97 Da        Isoelectric Point: 6.8308

>NTDB_id=961666 ACIX56_RS02625 WP_405200801.1 553416..554756(+) (rarA) [Actinobacillus pleuropneumoniae strain APL2303082E]
MSSLSFDFSEDFRPLPARMRPRTLAEYIGQAHLIGEGKPLRRAIEAGHSHSMIFWGPPSTGKTTLAEIIAHHFDAEVERL
SAVTSGVKEIREAIERAKLNRQTGRRTLLFVDEVHRFNKSQQDAFLPHIEDGTIIFIGATTENPSFELNNALLSRAKIYI
LKPLQAVEIAQVLTNALYDKERGLGNESYYIEDNVIELLADYVNGDARFALNCLELMSDMAEISPQGKHLNKALLAEVLG
ERQTRFDKGGDRYYDLISALHKSVRGSSPDGALYWYARILTAGGDPLYVARRLLAIASEDIGNADPRAMQVAINAWDCYT
RVGAYEGERAIAQAVIYLAVAPKSNAVYNAFNEAKRLAKEGKDYDVPEHLRNAPTKLMKSLGYGEEYRYAHHEPNAYAAG
ENYFPPELKDTVFYHPTERGMEKQIKEKLQWLKAQDQSSLQQRYKR

Nucleotide


Download         Length: 1341 bp        

>NTDB_id=961666 ACIX56_RS02625 WP_405200801.1 553416..554756(+) (rarA) [Actinobacillus pleuropneumoniae strain APL2303082E]
ATGAGTAGTTTGTCCTTTGATTTTTCAGAAGATTTTAGACCGCTGCCCGCCAGAATGCGTCCACGCACACTGGCGGAGTA
TATCGGGCAAGCTCATCTTATCGGAGAAGGTAAACCGCTACGCCGCGCGATAGAAGCGGGACATTCTCATTCCATGATCT
TCTGGGGGCCTCCCAGCACCGGTAAAACGACGTTAGCGGAAATTATCGCGCATCATTTTGATGCGGAAGTGGAACGCCTT
TCTGCGGTTACCAGCGGTGTGAAGGAAATCAGAGAAGCGATAGAGCGGGCTAAGCTCAATCGACAAACCGGCAGACGAAC
ATTACTTTTTGTCGATGAAGTACATCGCTTTAATAAAAGCCAACAAGACGCTTTTCTGCCGCATATTGAAGACGGCACCA
TTATTTTTATCGGTGCGACAACCGAGAATCCATCCTTTGAATTAAATAACGCCTTACTTTCCCGTGCGAAAATCTATATT
TTAAAACCGTTGCAAGCGGTTGAAATTGCACAAGTTTTAACTAATGCGCTTTACGATAAAGAACGAGGCTTAGGTAATGA
AAGCTATTACATCGAAGATAATGTGATTGAATTACTCGCCGATTACGTAAATGGGGATGCGAGATTCGCTTTAAATTGCT
TAGAACTGATGTCGGATATGGCAGAGATTTCCCCTCAAGGAAAACACCTGAATAAAGCATTGTTAGCCGAAGTATTGGGA
GAGCGACAAACTCGATTTGATAAAGGCGGCGATCGTTACTATGATTTAATCTCGGCATTGCATAAGTCGGTACGGGGCTC
ATCACCGGACGGCGCGTTGTATTGGTATGCGAGAATTTTAACCGCAGGCGGCGATCCTTTGTATGTTGCGCGCCGATTAT
TGGCAATCGCTTCGGAAGATATTGGCAATGCTGACCCTAGAGCGATGCAAGTTGCGATTAACGCTTGGGATTGCTATACC
CGAGTCGGGGCTTACGAAGGTGAAAGAGCGATTGCGCAAGCGGTGATTTATTTGGCGGTTGCGCCTAAAAGTAATGCGGT
TTATAACGCTTTCAATGAAGCGAAACGTCTTGCGAAAGAGGGCAAAGATTACGATGTACCGGAACATCTGCGCAATGCAC
CGACTAAGTTGATGAAATCGTTAGGTTATGGTGAAGAGTATCGTTACGCACATCATGAACCGAACGCTTATGCCGCCGGC
GAAAACTACTTCCCGCCGGAATTAAAAGATACGGTATTTTATCATCCGACGGAACGAGGTATGGAAAAGCAAATTAAGGA
AAAATTGCAGTGGCTAAAAGCACAAGATCAATCCAGCTTGCAACAACGTTACAAGCGGTAA

Domains

Predicted by InterProScan.

MgsA AAA+ ATPase C terminal (MgsA_C)

(266-432)

Holliday junction DNA helicase RuvB P-loop domain (RuvB_N)

(19-143)

AAA C-terminal domain (AAA_assoc_2)

(186-265)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

40.898

94.843

0.388