Detailed information    

insolico Bioinformatically predicted

Overview

Name   endA   Type   Machinery gene
Locus tag   V8N34_RS03895 Genome accession   NZ_CP149804
Coordinates   812701..813540 (+) Length   279 a.a.
NCBI ID   WP_318825209.1    Uniprot ID   A0AAJ2PG90
Organism   Streptococcus suis strain YA     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 807701..818540
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V8N34_RS03865 (V8N34_03865) - 808166..809044 (+) 879 WP_105148358.1 F0F1 ATP synthase subunit gamma -
  V8N34_RS03870 (V8N34_03870) atpD 809064..810470 (+) 1407 WP_024407431.1 F0F1 ATP synthase subunit beta -
  V8N34_RS03875 (V8N34_03875) - 810480..810896 (+) 417 WP_002936007.1 F0F1 ATP synthase subunit epsilon -
  V8N34_RS03880 (V8N34_03880) - 810956..811180 (+) 225 WP_318825207.1 DUF1146 family protein -
  V8N34_RS03885 (V8N34_03885) murA 811204..812487 (+) 1284 WP_318825208.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  V8N34_RS03890 (V8N34_03890) - 812480..812671 (+) 192 WP_024381399.1 DNA-directed RNA polymerase subunit beta -
  V8N34_RS03895 (V8N34_03895) endA 812701..813540 (+) 840 WP_318825209.1 DNA/RNA non-specific endonuclease Machinery gene
  V8N34_RS03900 (V8N34_03900) - 813727..815280 (+) 1554 WP_318825210.1 MFS transporter -
  V8N34_RS03905 (V8N34_03905) - 815336..816364 (+) 1029 WP_318825211.1 sugar kinase -
  V8N34_RS03910 (V8N34_03910) uidA 816380..818179 (+) 1800 WP_318825212.1 beta-glucuronidase -

Sequence

Protein


Download         Length: 279 a.a.        Molecular weight: 30145.37 Da        Isoelectric Point: 6.2370

>NTDB_id=961508 V8N34_RS03895 WP_318825209.1 812701..813540(+) (endA) [Streptococcus suis strain YA]
MAKKNVKKQAMSLLSLLATIVVVAGGYLLSDNKSSNVADYSYYVNQSKASEGTPSQELASSVLTEDVKKQLGNSIEWNGA
GAFIINGNQTDLDASVASVPYGDNKTKIVQGETVPTVANALLAKSTRQYKDREETGNGRTSWTPAGWHQIHDLTGEYDHA
VDRGHLLGYALIGGLSGFDASTSNPKNIAVQTAWSNQANDQTSTGQNYFESQIRRALDKNKRVRYRVTLVYAESEDLVPV
GSHLEAKAADGSLEFNVFVPNVQSGLSINYHSGEIAVNQ

Nucleotide


Download         Length: 840 bp        

>NTDB_id=961508 V8N34_RS03895 WP_318825209.1 812701..813540(+) (endA) [Streptococcus suis strain YA]
ATGGCGAAGAAAAATGTAAAAAAACAAGCAATGAGTCTGCTCAGCTTATTGGCTACGATTGTTGTAGTAGCGGGTGGCTA
TCTTTTAAGTGATAACAAGAGCAGTAACGTTGCTGATTATTCCTATTATGTCAATCAGTCTAAGGCAAGTGAAGGCACAC
CTAGTCAGGAACTGGCTAGTTCGGTATTGACAGAAGATGTAAAAAAGCAACTGGGGAATTCGATTGAATGGAATGGTGCT
GGAGCATTTATTATTAACGGAAATCAAACGGATTTAGATGCATCGGTTGCCAGTGTTCCTTATGGTGATAATAAGACAAA
AATAGTTCAGGGAGAGACGGTTCCAACCGTAGCCAATGCGCTTTTAGCCAAATCTACACGTCAGTATAAGGACCGTGAAG
AAACAGGAAATGGTCGGACTTCTTGGACACCTGCGGGGTGGCATCAGATCCATGATTTAACTGGAGAATATGACCATGCA
GTGGACCGTGGTCACCTCCTAGGTTATGCTTTGATTGGTGGATTGTCTGGTTTTGATGCTTCAACCAGCAATCCTAAGAA
TATTGCAGTTCAAACAGCTTGGTCCAACCAAGCTAACGACCAAACTTCAACTGGGCAGAATTATTTTGAAAGTCAGATTC
GGCGGGCCTTGGATAAAAATAAGCGTGTCCGCTATCGTGTGACCTTGGTGTATGCTGAGAGTGAAGACCTTGTTCCTGTC
GGAAGCCATCTAGAGGCAAAAGCAGCAGATGGTAGCCTAGAGTTCAATGTGTTCGTTCCAAATGTGCAGAGTGGTCTCAG
TATCAACTATCATAGTGGGGAAATTGCAGTAAATCAATAA

Domains

Predicted by InterproScan.

DNA/RNA non-specific endonuclease (Endonuclease_NS)

(81-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  endA Streptococcus pneumoniae Rx1

69.915

84.588

0.591
  endA Streptococcus pneumoniae D39

69.915

84.588

0.591
  endA Streptococcus pneumoniae R6

69.915

84.588

0.591
  endA Streptococcus pneumoniae TIGR4

69.915

84.588

0.591