Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   WIS23_RS07620 Genome accession   NZ_CP149744
Coordinates   1721147..1722979 (+) Length   610 a.a.
NCBI ID   WP_003433862.1    Uniprot ID   A0A031WIR2
Organism   Clostridioides difficile strain Z1322HCD0043     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1716147..1727979
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WIS23_RS07600 (WIS23_07600) - 1716483..1716821 (-) 339 WP_003423377.1 helix-turn-helix transcriptional regulator -
  WIS23_RS07605 (WIS23_07605) - 1717508..1718074 (+) 567 WP_003423380.1 carbonic anhydrase -
  WIS23_RS07610 (WIS23_07610) - 1718379..1718840 (+) 462 WP_003433857.1 MarR family transcriptional regulator -
  WIS23_RS07615 (WIS23_07615) - 1718908..1721154 (+) 2247 WP_003433859.1 ABC transporter ATP-binding protein -
  WIS23_RS07620 (WIS23_07620) rcrQ 1721147..1722979 (+) 1833 WP_003433862.1 ABC transporter ATP-binding protein Regulator
  WIS23_RS07625 (WIS23_07625) hflX 1723704..1724975 (+) 1272 WP_009897369.1 GTPase HflX -
  WIS23_RS07630 (WIS23_07630) - 1725208..1725705 (+) 498 WP_021365556.1 MarR family transcriptional regulator -
  WIS23_RS07635 (WIS23_07635) - 1725754..1726278 (+) 525 WP_021365555.1 flavodoxin domain-containing protein -
  WIS23_RS07640 (WIS23_07640) - 1726590..1727954 (+) 1365 WP_021362689.1 aldehyde dehydrogenase -

Sequence

Protein


Download         Length: 610 a.a.        Molecular weight: 68031.88 Da        Isoelectric Point: 6.2927

>NTDB_id=961178 WIS23_RS07620 WP_003433862.1 1721147..1722979(+) (rcrQ) [Clostridioides difficile strain Z1322HCD0043]
MSRMGRGPMGKSMGAGQKANDFKGTMRKLIAYLSKFKISIILVIVFAIGSASFSIVGPKILGKATTKIFEGLVSKVSGGN
VGIDFNAIGKILTFLLFLYLISALFSFIQGFIMSGISQKVSYNLRKEISAKLDRLPMKYFDTKTHGEILSRITNDIDTLN
QSLNQSMTQLITSVTTMIGVLIMMLSISGIMTLVAVLILPISMFVISRIIKKSQKYFRYQQEYLGNVNGQVEETYSGQTI
VKAFNREDEVIEEFDKLNDSLYNSAWKSQFLSGIMQPLMMFIGNLGYVMVSILGGWLAIKKTIEVGDIQSFIQYVRNFTQ
PMTQIAQVANLLQSTAAASERVFEFLEEEEEVQIVENAVSIDGLEGKIDFENVNFGYNPNKTIINDFSVNVKPGQKVAIV
GPTGAGKTTIVKLLMRFYDVNSGSILIDGHNIKDFNRSELREMFGMVLQDTWLFSGSIMENIRYGKLNATDEEVIEAAKS
AHVHRFIKTLPDGYKMKLNEEASNVSQGQKQLLTIARAILADPKILILDEATSSVDTRTEVLIQKAMDNLMEGRTSFVIA
HRLSTIRDADMILVMNEGDIVEQGNHEELLKKGGFYANLYNSQFEEDEAM

Nucleotide


Download         Length: 1833 bp        

>NTDB_id=961178 WIS23_RS07620 WP_003433862.1 1721147..1722979(+) (rcrQ) [Clostridioides difficile strain Z1322HCD0043]
ATGAGTAGAATGGGAAGAGGTCCTATGGGAAAATCTATGGGAGCAGGACAAAAAGCAAATGACTTTAAAGGGACTATGCG
AAAACTAATTGCATATTTATCTAAATTTAAAATATCAATAATTCTAGTAATTGTATTTGCTATTGGTAGTGCGTCGTTTT
CTATAGTAGGTCCAAAAATTTTAGGAAAGGCAACTACAAAGATATTTGAAGGGCTAGTGAGTAAAGTTTCTGGAGGAAAC
GTAGGTATAGATTTTAATGCAATTGGAAAAATCTTAACCTTTTTACTTTTCCTTTATTTGATAAGTGCACTGTTCTCTTT
TATACAAGGATTTATAATGAGTGGAATTTCTCAAAAAGTATCCTATAATTTAAGAAAAGAGATTTCAGCAAAATTGGATA
GATTGCCAATGAAGTATTTTGATACTAAGACGCATGGTGAAATATTATCGAGAATTACGAATGATATAGATACTTTAAAT
CAAAGTTTAAATCAAAGTATGACACAGCTTATAACATCAGTAACAACTATGATAGGTGTTTTGATAATGATGTTATCTAT
AAGTGGAATTATGACATTAGTGGCAGTTTTAATATTACCAATATCAATGTTTGTAATTTCAAGAATAATAAAGAAATCAC
AAAAATACTTTAGATATCAACAAGAATATTTAGGAAATGTAAATGGTCAAGTTGAGGAAACTTACAGTGGCCAAACAATA
GTAAAAGCATTTAATCGTGAGGATGAAGTAATTGAAGAGTTTGATAAACTAAATGATAGCCTGTATAATTCAGCGTGGAA
ATCTCAATTTTTATCAGGTATAATGCAACCACTTATGATGTTTATTGGAAACTTGGGATATGTAATGGTATCAATCTTAG
GAGGTTGGCTTGCAATTAAGAAAACAATTGAGGTTGGTGACATACAGTCATTTATACAATATGTAAGAAACTTTACACAG
CCAATGACTCAGATTGCACAGGTTGCCAATTTATTGCAATCAACAGCAGCAGCTTCTGAAAGAGTATTTGAGTTTTTAGA
AGAGGAAGAAGAAGTCCAAATTGTTGAAAATGCAGTTTCAATAGATGGTTTAGAAGGTAAAATTGATTTTGAAAATGTCA
ACTTTGGATATAACCCAAACAAGACTATAATAAATGATTTCTCAGTAAATGTTAAACCTGGTCAAAAAGTTGCTATTGTT
GGACCTACAGGAGCAGGTAAAACTACAATAGTTAAACTGTTAATGAGATTTTATGATGTTAATAGCGGTTCAATACTGAT
TGATGGTCATAATATTAAAGATTTTAATCGTAGTGAGCTTAGAGAAATGTTTGGTATGGTTCTTCAAGATACATGGTTAT
TTAGTGGTTCAATTATGGAAAATATAAGATATGGTAAGTTGAATGCTACAGATGAAGAAGTTATAGAGGCTGCTAAATCT
GCACATGTTCATAGATTTATTAAGACATTACCAGATGGATATAAGATGAAATTAAATGAAGAAGCAAGTAATGTTTCTCA
AGGTCAAAAACAATTATTGACTATAGCTCGTGCTATTTTAGCTGATCCTAAAATTTTAATATTAGATGAAGCTACAAGTT
CTGTCGATACTAGAACAGAAGTATTGATTCAAAAAGCTATGGATAATCTTATGGAAGGTAGAACAAGTTTTGTTATAGCC
CACAGATTATCAACTATACGTGATGCTGATATGATTCTTGTAATGAATGAAGGAGATATAGTTGAACAAGGAAATCATGA
GGAACTTCTAAAGAAAGGCGGATTCTACGCCAATCTTTACAATTCTCAATTTGAAGAAGATGAAGCAATGTAA

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(40-322)

ABC transporter (ABC_tran)

(385-533)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

51.607

96.885

0.5