Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   AABA19_RS08390 Genome accession   NZ_AP028609
Coordinates   1660905..1662176 (+) Length   423 a.a.
NCBI ID   WP_138030770.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain Sep4     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1655905..1667176
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AABA19_RS08355 (TKY121806_16620) - 1656970..1657398 (-) 429 WP_216969732.1 NUDIX hydrolase -
  AABA19_RS08360 (TKY121806_16630) - 1657379..1658467 (-) 1089 WP_000719722.1 site-2 protease family protein -
  AABA19_RS08365 (TKY121806_16640) - 1658486..1658956 (-) 471 WP_000257097.1 DUF3013 family protein -
  AABA19_RS08370 (TKY121806_16650) - 1659247..1659699 (-) 453 WP_000961810.1 type II toxin-antitoxin system HicB family antitoxin -
  AABA19_RS08375 (TKY121806_16660) - 1659736..1659915 (-) 180 WP_001132283.1 type II toxin-antitoxin system HicA family toxin -
  AABA19_RS08380 (TKY121806_16670) - 1660052..1660231 (-) 180 WP_001809903.1 hypothetical protein -
  AABA19_RS08385 (TKY121806_16680) - 1660396..1660635 (-) 240 WP_000818079.1 hypothetical protein -
  AABA19_RS08390 (TKY121806_16690) rarA 1660905..1662176 (+) 1272 WP_138030770.1 replication-associated recombination protein A Machinery gene
  AABA19_RS08400 (TKY121806_16700) - 1662596..1663723 (-) 1128 WP_050146883.1 tyrosine-type recombinase/integrase -
  AABA19_RS08405 (TKY121806_16710) - 1663725..1663907 (-) 183 WP_000655516.1 DUF3173 domain-containing protein -
  AABA19_RS08410 (TKY121806_16720) - 1663923..1664219 (-) 297 WP_000275176.1 hypothetical protein -
  AABA19_RS08415 (TKY121806_16730) - 1664252..1664965 (-) 714 WP_338170640.1 hypothetical protein -
  AABA19_RS08420 (TKY121806_16740) - 1665099..1665362 (-) 264 WP_000665591.1 hypothetical protein -
  AABA19_RS08425 (TKY121806_16750) - 1665538..1666845 (-) 1308 WP_050294597.1 FtsK/SpoIIIE domain-containing protein -

Sequence

Protein


Download         Length: 423 a.a.        Molecular weight: 46983.42 Da        Isoelectric Point: 5.9463

>NTDB_id=95984 AABA19_RS08390 WP_138030770.1 1660905..1662176(+) (rarA) [Streptococcus pneumoniae strain Sep4]
MPDNLALRMRPKTIDQVIGQDHLVGPGKIIRRMVEANRLSSMILYGPPGIGKTSIASAIAGTTKYAFRTFNATVDSKKRL
QEISEEAKFSGGLVLLLDEIHRLDKTKQDFLLPLLESGLVIMIGATTENPFFSVTPAIRSRVQIFELEPLSNQDVKEALQ
IALSNPERGFDFPIELDEDALDFIATSTNGDLRSAFNSLDLAVLSTPENDEGIRHITLDIMENSLQRSYITMDKDGDGHY
DVLSALQKSIRGSDVDASLHYAARLIEAGDLPSLARRLTVIAYEDIGLANPEAQIHTVTALDAAQRIGFPEARILIANVV
IDLALSPKSNSAYVAMDKALADLKTSGHLPIPRHLRDGHYSGSKELGNAQDYLYPHNYPGNWVKQDYLPEKIRNHHYFQA
EDTGKYERALAQRKEAIDRLRKI

Nucleotide


Download         Length: 1272 bp        

>NTDB_id=95984 AABA19_RS08390 WP_138030770.1 1660905..1662176(+) (rarA) [Streptococcus pneumoniae strain Sep4]
ATGCCAGACAATCTCGCGCTTCGCATGCGCCCTAAAACCATCGACCAGGTCATCGGTCAGGATCATCTGGTCGGACCTGG
AAAAATCATCCGCCGCATGGTGGAAGCCAACCGCCTGTCCTCCATGATTCTATATGGCCCTCCGGGAATCGGCAAAACCA
GTATTGCCTCTGCCATCGCTGGAACGACCAAGTATGCCTTTCGAACTTTCAATGCGACAGTTGATAGTAAAAAGCGACTG
CAAGAAATCTCGGAAGAAGCTAAATTTTCTGGTGGTCTCGTCCTATTGCTAGACGAAATTCATCGACTAGATAAGACCAA
GCAAGACTTCCTCTTGCCTCTCTTGGAAAGTGGACTGGTCATCATGATTGGAGCAACGACTGAAAATCCTTTCTTTTCCG
TCACTCCTGCCATTCGTAGCCGTGTTCAAATTTTTGAGTTGGAACCTCTGTCTAACCAAGACGTCAAAGAGGCCCTGCAG
ATAGCTCTAAGTAACCCTGAACGTGGTTTTGATTTTCCAATAGAACTAGATGAGGATGCGCTGGATTTCATCGCAACCTC
TACAAACGGAGACCTTCGCTCTGCCTTTAACTCACTGGACTTGGCTGTTCTCTCTACCCCTGAGAATGACGAGGGCATTC
GCCACATCACCTTAGACATCATGGAAAATAGTCTTCAGAGAAGCTACATCACTATGGACAAGGATGGAGACGGTCACTAT
GATGTTCTATCTGCCCTGCAAAAGTCTATCCGTGGCTCAGATGTGGATGCCAGTCTCCACTATGCTGCCCGCTTGATTGA
GGCTGGGGATCTGCCTAGTCTCGCTCGTCGCTTGACTGTTATCGCCTATGAAGATATTGGCTTAGCCAATCCTGAGGCCC
AGATTCATACCGTGACTGCTCTGGATGCTGCACAAAGGATTGGTTTCCCCGAAGCCCGCATTCTCATTGCCAATGTCGTG
ATTGATTTGGCCCTTTCTCCAAAATCCAACTCAGCCTATGTAGCTATGGATAAGGCACTTGCTGACCTCAAAACATCAGG
GCACTTGCCTATTCCGCGACACCTGCGTGATGGGCACTACAGTGGAAGCAAGGAACTGGGGAATGCCCAAGACTATCTCT
ATCCACACAACTATCCTGGAAATTGGGTCAAGCAAGACTATCTGCCAGAAAAAATTCGTAATCATCACTATTTCCAAGCA
GAAGATACTGGTAAATATGAACGGGCTTTGGCTCAAAGAAAGGAAGCTATCGATCGTTTGCGAAAAATCTGA

Domains

Predicted by InterProScan.

MgsA AAA+ ATPase C terminal (MgsA_C)

(252-416)

ATPase family associated with various cellular activities (AAA) (AAA)

(42-144)

AAA C-terminal domain (AAA_assoc_2)

(173-251)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

57.757

99.054

0.572

Multiple sequence alignment