Detailed information    

insolico Bioinformatically predicted

Overview


Name   proC   Type   Machinery gene
Locus tag   WJ044_RS05800 Genome accession   NZ_CP149499
Coordinates   1122508..1123239 (+) Length   243 a.a.
NCBI ID   WP_002882606.1    Uniprot ID   A0A5Z0CCN3
Organism   Campylobacter jejuni strain CIP 702     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context


Location: 1117508..1128239
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WJ044_RS05770 (WJ044_05775) rpsF 1117647..1118024 (+) 378 WP_002812868.1 30S ribosomal protein S6 -
  WJ044_RS05775 (WJ044_05780) ssb 1118033..1118587 (+) 555 WP_002882609.1 single-stranded DNA-binding protein -
  WJ044_RS05780 (WJ044_05785) rpsR 1118598..1118858 (+) 261 WP_002853032.1 30S ribosomal protein S18 -
  WJ044_RS05785 (WJ044_05790) lon 1118919..1121294 (-) 2376 WP_002866098.1 endopeptidase La -
  WJ044_RS05790 (WJ044_05795) bamD 1121311..1121958 (-) 648 WP_002882608.1 outer membrane protein assembly factor BamD -
  WJ044_RS05795 (WJ044_05800) fliW 1122119..1122508 (+) 390 WP_002852982.1 flagellar assembly protein FliW -
  WJ044_RS05800 (WJ044_05805) proC 1122508..1123239 (+) 732 WP_002882606.1 pyrroline-5-carboxylate reductase Machinery gene
  WJ044_RS05805 (WJ044_05810) ctsT 1123236..1123538 (+) 303 WP_002855822.1 transformation system protein Machinery gene
  WJ044_RS05810 (WJ044_05815) - 1123535..1124197 (+) 663 WP_002882605.1 hypothetical protein -
  WJ044_RS05815 (WJ044_05820) - 1124194..1124646 (+) 453 WP_002859148.1 hypothetical protein -
  WJ044_RS05820 (WJ044_05825) hemD 1124643..1125272 (-) 630 WP_002882604.1 uroporphyrinogen-III synthase -
  WJ044_RS05825 (WJ044_05830) thiE 1125250..1125882 (-) 633 WP_002882603.1 thiamine phosphate synthase -
  WJ044_RS05830 (WJ044_05835) thiD 1125872..1126684 (-) 813 WP_002882602.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  WJ044_RS05835 (WJ044_05840) - 1126681..1127367 (-) 687 WP_002882601.1 endonuclease III domain-containing protein -
  WJ044_RS05840 (WJ044_05845) - 1127364..1128125 (-) 762 WP_002882600.1 ATP-binding protein -

Sequence


Protein


Download         Length: 243 a.a.        Molecular weight: 26506.91 Da        Isoelectric Point: 8.0980

>NTDB_id=959693 WJ044_RS05800 WP_002882606.1 1122508..1123239(+) (proC) [Campylobacter jejuni strain CIP 702]
MLYILANGAMATALAYGLKDDYEICIVGRSIEKLQALTKEGFKTLLYKDFNIEGKDVILAFKPYALENIAQVLKGQARIL
ISVLANVDFEKLQTIKAQNYVRIMPNTAAKYKASTTPYILKNSHFENEILDILKTFGSAYKLDNEIQMNAAMAISGCAPA
FLALIAESIANAGVYEGLSKELSLNLTCSLFKSSSALLEHEHPAIIKENICSPGGVTIKGIKILEQKGIRGSFFEAINAS
SAK

Nucleotide


Download         Length: 732 bp        

>NTDB_id=959693 WJ044_RS05800 WP_002882606.1 1122508..1123239(+) (proC) [Campylobacter jejuni strain CIP 702]
ATGCTCTATATACTTGCAAATGGAGCTATGGCAACAGCCTTAGCCTATGGATTAAAAGATGATTATGAAATTTGTATAGT
AGGAAGAAGTATAGAAAAACTTCAAGCCCTCACCAAAGAAGGCTTTAAAACCTTACTTTACAAAGATTTTAACATAGAAG
GTAAAGATGTTATTTTAGCATTTAAACCCTATGCTTTAGAAAATATTGCTCAAGTGCTAAAAGGACAAGCACGTATCTTA
ATCTCTGTTTTAGCCAATGTTGATTTTGAAAAACTACAAACCATCAAAGCTCAAAATTATGTCAGAATAATGCCCAATAC
AGCAGCTAAATATAAGGCTTCAACCACACCATATATACTTAAAAACTCTCATTTTGAAAATGAAATTTTAGACATTTTAA
AAACTTTTGGCTCGGCTTATAAGTTAGATAATGAAATACAAATGAATGCAGCTATGGCGATTAGCGGTTGCGCTCCTGCT
TTTTTAGCACTTATAGCAGAAAGTATTGCTAATGCTGGAGTTTATGAAGGTTTGTCAAAAGAACTTAGTCTCAATCTTAC
GTGCTCTTTATTTAAAAGCTCTAGTGCTTTACTAGAACATGAACATCCAGCTATTATCAAAGAAAATATTTGCTCCCCTG
GCGGAGTTACAATAAAAGGCATAAAAATACTCGAACAAAAAGGAATTCGCGGAAGTTTTTTTGAAGCCATAAATGCTAGC
AGCGCTAAATGA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB A0A5Z0CCN3

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  proC Campylobacter jejuni subsp. jejuni 81-176

98.354

100

0.984