Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   WJ040_RS07515 Genome accession   NZ_CP149497
Coordinates   1518448..1520841 (-) Length   797 a.a.
NCBI ID   WP_025279948.1    Uniprot ID   -
Organism   Listeria ivanovii strain Li 1979     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1513448..1525841
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WJ040_RS07495 (WJ040_07485) - 1513908..1514603 (-) 696 WP_014092868.1 ABC transporter ATP-binding protein -
  WJ040_RS07500 (WJ040_07490) - 1514612..1516120 (-) 1509 WP_014092869.1 ABC transporter permease -
  WJ040_RS07505 (WJ040_07495) pieR 1516287..1516973 (+) 687 WP_014092870.1 two component system response regulator PieR -
  WJ040_RS07510 (WJ040_07500) pieS 1516970..1518409 (+) 1440 WP_014092871.1 two component system sensor histidine kinase PieS -
  WJ040_RS07515 (WJ040_07505) recD2 1518448..1520841 (-) 2394 WP_025279948.1 ATP-dependent RecD-like DNA helicase Machinery gene
  WJ040_RS07520 (WJ040_07510) - 1520867..1521505 (-) 639 WP_014092873.1 tetratricopeptide repeat protein -
  WJ040_RS07525 (WJ040_07515) - 1521548..1522288 (-) 741 WP_014092874.1 alpha/beta hydrolase -
  WJ040_RS07530 (WJ040_07520) mnmA 1522407..1523522 (-) 1116 WP_014092875.1 tRNA 2-thiouridine(34) synthase MnmA -
  WJ040_RS07535 (WJ040_07525) - 1523541..1524689 (-) 1149 WP_014092876.1 cysteine desulfurase family protein -

Sequence

Protein


Download         Length: 797 a.a.        Molecular weight: 90115.36 Da        Isoelectric Point: 4.9786

>NTDB_id=959650 WJ040_RS07515 WP_025279948.1 1518448..1520841(-) (recD2) [Listeria ivanovii strain Li 1979]
MAEQESLALFDTPEELFMKGTMLSTIFYNAENLFSVVRILVKETNADWDEKDIIVTGFFPALHEQEVYTFYGKMQEHAKF
GQQFKAERFRKEMPQSRAGLINYLSGELFKGIGKVTAENIVDTIGDDAITRILSDPSLLNNVPKLPSGAAESLLASLREN
QGLEHVMVGLNEYGFGPQLSMKIFQAYKQNAIEVLENNPYKLIEDVKGIGFHRADELGRKLGLGGNHPERLRAGILFMLD
SVCMQQGHVYMEQEALLAEVTFLLEESEGIRIDHAILMEQIEKLAEEQKIIMENTRVYMPSLYYSESGFAYHVKRMLKQT
QYQEQFPQSEFLLALGELEERIGVHYGDSQREALEQALMSPMLVLTGGPGTGKTTVIKGIVELYAELNGVSLDPHAYKDG
ATFPVLLAAPTGRAAKRMSESTGLPSMTIHRLLGMNGQEQMDDDAERLIDGRLLIVDEMSMVDIWLANQLFRALPSHMQV
VLVGDQDQLPSVGPGQVLKDILHSKQIPTVALSDIYRQKDGSSIIEMAHNIKEGMLPADFAKNSADRSFFHCTVNQIGDV
VEQVVKNAKNKGFRAKDIQVLAPMYRGPAGIDILNKKLQEIFNPNDTGRRKEVQFGELKYRIHDKVLQLINQPEKNVFNG
DIGEIVSIIYAKENTEKQDMIVVQFDQTEVSYYRQEFNQLTHAYCCSIHKAQGSEFPIVIMPIVRSYYRMLRRDLLYTGV
TRSKQFLILCGEEEAFRMGVERVDENKRNTTLSERLISEDVMLEQMTNKRILTIENITEIDPMIGMEGITPNQFMAG

Nucleotide


Download         Length: 2394 bp        

>NTDB_id=959650 WJ040_RS07515 WP_025279948.1 1518448..1520841(-) (recD2) [Listeria ivanovii strain Li 1979]
ATGGCTGAACAAGAATCTCTCGCTTTATTTGACACGCCAGAAGAGCTTTTTATGAAGGGCACGATGTTGTCCACCATTTT
TTATAATGCCGAAAACCTCTTTTCTGTTGTGCGAATTCTTGTCAAAGAAACCAATGCAGATTGGGATGAAAAAGATATTA
TTGTGACTGGTTTTTTCCCCGCTTTACATGAACAAGAAGTGTATACTTTTTATGGGAAAATGCAGGAACATGCCAAATTT
GGACAGCAATTTAAAGCAGAACGTTTTAGGAAAGAAATGCCGCAATCTCGTGCTGGTTTAATTAATTATCTGTCTGGTGA
GCTTTTTAAAGGTATTGGCAAAGTGACTGCGGAAAATATTGTTGATACAATTGGCGACGATGCAATTACGCGGATTTTAT
CTGATCCAAGTTTACTTAATAATGTTCCAAAGTTACCATCTGGTGCTGCGGAGAGCCTCCTTGCTTCTTTACGAGAAAAT
CAAGGCTTAGAGCATGTGATGGTCGGGCTAAATGAATATGGATTTGGTCCACAACTTTCGATGAAGATTTTTCAAGCATA
TAAACAAAATGCTATCGAAGTACTTGAAAACAATCCATACAAATTAATTGAGGATGTCAAAGGTATTGGATTTCACCGAG
CGGATGAGCTTGGTCGGAAATTAGGACTAGGAGGAAATCATCCTGAACGCCTTCGTGCGGGAATTTTATTTATGCTTGAT
TCTGTATGCATGCAACAAGGCCATGTTTATATGGAACAAGAAGCGCTACTTGCAGAAGTGACCTTTTTGCTAGAAGAAAG
TGAAGGTATTCGAATTGATCATGCTATTTTAATGGAACAAATAGAAAAGCTTGCTGAAGAACAAAAAATTATCATGGAAA
ACACACGTGTCTATATGCCATCTTTATATTATTCGGAAAGCGGCTTTGCTTATCATGTAAAACGGATGCTGAAACAAACA
CAGTATCAAGAGCAATTTCCGCAGTCTGAGTTCTTGCTGGCACTTGGAGAGTTAGAAGAGCGAATTGGTGTTCATTACGG
AGATTCGCAGCGAGAGGCGTTAGAGCAAGCTTTAATGTCGCCGATGCTTGTACTTACTGGTGGACCAGGAACAGGGAAGA
CTACTGTTATTAAAGGTATTGTGGAATTATATGCCGAATTAAATGGTGTAAGTCTAGACCCGCATGCTTATAAAGATGGC
GCGACGTTTCCAGTTCTGTTAGCGGCACCAACTGGACGAGCAGCTAAGCGAATGTCTGAGTCAACAGGACTTCCATCAAT
GACCATTCACCGTTTACTCGGTATGAATGGGCAAGAGCAAATGGATGATGATGCAGAAAGATTAATTGATGGTCGGCTTT
TAATTGTAGATGAAATGTCGATGGTGGATATTTGGCTTGCTAACCAACTATTTCGTGCACTTCCTTCGCATATGCAAGTA
GTTTTAGTAGGAGACCAAGACCAATTGCCATCAGTTGGACCAGGACAGGTCTTGAAAGATATACTTCACTCGAAACAAAT
TCCAACCGTTGCGCTTTCAGATATTTATAGGCAAAAAGATGGATCTTCCATTATTGAGATGGCTCATAATATTAAAGAAG
GCATGTTGCCAGCTGATTTTGCGAAAAATAGTGCTGATCGTTCTTTCTTTCACTGTACCGTGAATCAAATTGGTGATGTC
GTTGAACAAGTCGTAAAAAATGCCAAAAATAAAGGTTTCCGCGCAAAAGATATTCAAGTTTTAGCACCGATGTATCGTGG
CCCGGCTGGAATCGATATTTTAAATAAAAAGCTACAAGAAATTTTTAATCCTAATGACACTGGCAGACGTAAAGAAGTGC
AATTTGGCGAATTAAAATATCGTATACATGATAAAGTTTTGCAGTTAATAAATCAACCGGAAAAAAATGTCTTTAACGGC
GATATCGGGGAAATAGTATCGATTATTTATGCGAAGGAAAACACCGAAAAGCAAGATATGATTGTTGTGCAATTTGATCA
AACCGAAGTATCCTATTACCGGCAAGAATTTAATCAATTGACGCATGCTTATTGTTGTTCTATTCATAAAGCACAAGGTA
GCGAGTTTCCCATTGTGATTATGCCAATTGTTCGTAGCTATTACCGAATGTTACGACGTGACTTGTTATATACGGGTGTC
ACTCGAAGCAAGCAATTTTTGATTCTTTGCGGTGAAGAAGAGGCGTTTCGAATGGGTGTTGAGCGTGTCGATGAAAACAA
ACGTAATACGACGCTTTCAGAACGTTTAATAAGTGAAGATGTTATGCTCGAACAAATGACCAATAAACGAATTTTAACTA
TCGAAAATATTACCGAAATAGATCCGATGATTGGGATGGAAGGAATAACCCCCAACCAATTTATGGCAGGCTAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix containing domain (HHH_RecD2)

(159-250)

AAA domain (AAA_30)

(346-553)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(594-665)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(682-730)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

57.36

98.871

0.567