Detailed information    

insolico Bioinformatically predicted

Overview

Name   ylbF   Type   Regulator
Locus tag   ACI2O8_RS08470 Genome accession   NZ_CP173415
Coordinates   1595309..1595758 (+) Length   149 a.a.
NCBI ID   WP_003221370.1    Uniprot ID   G4NWT8
Organism   Bacillus subtilis strain FJYA24     
Function   accelerate the production of Spo0A~P (predicted from homology)   
Competence regulation

Genomic Context

Location: 1590309..1600758
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACI2O8_RS08430 (ACI2O8_08430) ctaE 1590325..1590948 (+) 624 WP_003232244.1 cytochrome c oxidase subunit III -
  ACI2O8_RS08435 (ACI2O8_08435) ctaF 1590951..1591283 (+) 333 WP_003232242.1 cytochrome c oxidase subunit IVB -
  ACI2O8_RS08440 (ACI2O8_08440) ctaG 1591311..1592204 (+) 894 WP_003244967.1 cytochrome c oxidase assembly factor CtaG -
  ACI2O8_RS08445 (ACI2O8_08445) ylbA 1592236..1592598 (-) 363 WP_003232238.1 YugN family protein -
  ACI2O8_RS08450 (ACI2O8_08450) ylbB 1592738..1593184 (+) 447 WP_029726520.1 CBS domain-containing protein -
  ACI2O8_RS08455 (ACI2O8_08455) ylbC 1593268..1594308 (+) 1041 WP_014479713.1 CAP domain-containing protein -
  ACI2O8_RS08460 (ACI2O8_08460) ylbD 1594540..1594938 (+) 399 WP_003232233.1 YlbD family protein -
  ACI2O8_RS08465 (ACI2O8_08465) ylbE 1594954..1595193 (+) 240 WP_003232231.1 YlbE-like family protein -
  ACI2O8_RS08470 (ACI2O8_08470) ylbF 1595309..1595758 (+) 450 WP_003221370.1 regulatory iron-sulfur-containing complex subunit RicF Regulator
  ACI2O8_RS08475 (ACI2O8_08475) ylbG 1595813..1596085 (+) 273 WP_024573211.1 YlbG family protein -
  ACI2O8_RS08480 (ACI2O8_08480) rsmD 1596408..1596962 (+) 555 WP_029726518.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  ACI2O8_RS08485 (ACI2O8_08485) coaD 1596967..1597452 (+) 486 WP_003245283.1 pantetheine-phosphate adenylyltransferase -
  ACI2O8_RS08490 (ACI2O8_08490) spoVV 1597463..1598689 (-) 1227 WP_029726517.1 dipicolinic acid transporter SpoVV -
  ACI2O8_RS08495 (ACI2O8_08495) ylbK 1598870..1599652 (+) 783 WP_003232221.1 patatin family protein -
  ACI2O8_RS08500 (ACI2O8_08500) sepM 1599654..1600679 (+) 1026 WP_029726516.1 protease DdcP Regulator

Sequence

Protein


Download         Length: 149 a.a.        Molecular weight: 16913.96 Da        Isoelectric Point: 4.9284

>NTDB_id=958769 ACI2O8_RS08470 WP_003221370.1 1595309..1595758(+) (ylbF) [Bacillus subtilis strain FJYA24]
MYATMESVRLQSEAQQLAEMILQSETAENYRNCYKRLQEDEEAGRIIRSFIKIKEQYEDVQRFGKYHPDYREISRKMREI
KRELDLNDKVADFKRAENELQSILDEVSVEIGTAVSEHVKVPTGNPYFDGLSSCGGGCGSGGSCGCKVS

Nucleotide


Download         Length: 450 bp        

>NTDB_id=958769 ACI2O8_RS08470 WP_003221370.1 1595309..1595758(+) (ylbF) [Bacillus subtilis strain FJYA24]
ATGTATGCGACGATGGAATCCGTGCGGCTTCAAAGTGAAGCTCAGCAGCTTGCCGAGATGATTCTGCAGTCGGAGACGGC
TGAGAACTACCGCAATTGTTACAAGCGTCTCCAGGAAGATGAAGAGGCAGGTCGGATTATTCGTTCTTTTATCAAAATAA
AAGAGCAGTATGAGGATGTACAGCGTTTTGGCAAATATCATCCTGACTATAGAGAAATATCCCGGAAAATGAGGGAGATC
AAACGTGAGCTGGACCTGAACGACAAGGTGGCTGACTTCAAGAGAGCTGAAAATGAGCTCCAGTCCATTCTTGATGAGGT
CAGCGTTGAGATTGGGACAGCTGTTTCGGAGCATGTGAAAGTTCCGACTGGGAACCCTTATTTTGACGGTTTGTCTTCAT
GCGGAGGCGGCTGCGGTTCAGGCGGAAGCTGCGGATGTAAAGTGTCCTGA

Domains

Predicted by InterProScan.

Control of competence regulator ComK, YlbF/YmcA (Com_YlbF)

(12-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NWT8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ylbF Bacillus subtilis subsp. subtilis str. 168

100

100

1